VTR

13 main matches found (40 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.27

VTR = 0.01

Average AVD = 0.25 Å

Parameters

Chains(7C8V.pdb ): B versus A

Chains(7C8V_africa_mut.pdb ) B versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7C8V 313 27 0 12 0 0 3 42
B7C8V_africa_mut 313 32 0 12 0 2 4 50

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-B A-B N33 Y453 N33 Y453 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-B A-B W99 Y449 W99 Y449 Hydrophobic Hydrophobic 0.31 View
A-B A-B W32 F490 W32 F490 Hydrophobic Hydrophobic 0.13 View
A-B A-B N33 Q493 N33 Q493 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-B A-B S53 Q493 S53 Q493 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-B A-B H54 F456 H54 F456 Aromatic Stacking Aromatic Stacking 0.16 View
A-B A-B W32 F490 W32 F490 Hydrophobic Hydrophobic 0.13 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.28 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.29 View
A-B A-B Y37 Q498 Y37 Q498 Hydrophobic Hydrophobic 0.2 View
A-B A-B Y37 G447 Y37 G447 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-B A-B W35 Y449 W35 Y449 Aromatic Stacking Aromatic Stacking 0.18 View
A-B A-B T103 Y449 T103 Y449 Hydrophobic Hydrophobic 0.24 View
A-B A-B H54 Y489 H54 Y489 Aromatic Stacking Aromatic Stacking 0.1 View
A-B A-B W99 L452 W99 L452 Hydrophobic Hydrophobic 0.3 View
A-B A-B W99 Y449 W99 Y449 Hydrophobic Hydrophobic 0.29 View
A-B A-B N33 Y453 N33 Y453 Hydrogen Bonds Hydrogen Bonds 0.34 View
A-B A-B N33 S494 N33 S494 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.3 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.3 View
A-B A-B R45 V445 R45 V445 Hydrophobic Hydrophobic 0.32 View
A-B A-B W99 Y449 W99 Y449 Hydrophobic Hydrophobic 0.32 View
A-B A-B W32 F490 W32 F490 Hydrophobic Hydrophobic 0.15 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.29 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.29 View
A-B A-B H54 F456 H54 F456 Hydrophobic Hydrophobic 0.22 View
A-B A-B W32 F490 W32 F490 Hydrophobic Hydrophobic 0.14 View
A-B A-B W47 Q498 W47 Q498 Hydrophobic Hydrophobic 0.15 View
A-B A-B W47 Q498 W47 Q498 Hydrophobic Hydrophobic 0.16 View
A-B A-B W99 L452 W99 L452 Hydrophobic Hydrophobic 0.29 View
A-B A-B H54 L455 H54 L455 Hydrophobic Hydrophobic 0.43 View
A-B A-B W35 Y449 W35 Y449 Hydrophobic Hydrophobic 0.24 View
A-B A-B W32 F490 W32 F490 Hydrophobic Hydrophobic 0.13 View
A-B A-B W99 L452 W99 L452 Hydrophobic Hydrophobic 0.3 View
A-B A-B S53 Q493 S53 Q493 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-B A-B S31 Q493 S31 Q493 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-B A-B W99 L452 W99 L452 Hydrophobic Hydrophobic 0.32 View
A-B A-B Y37 G446 Y37 G446 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-B A-B W99 L452 W99 L452 Hydrophobic Hydrophobic 0.32 View
A-B A-B N33 Q493 N33 Q493 Hydrogen Bonds Hydrogen Bonds 0.29 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7C8V | 7C8V_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7C8V A-B R59 N501 Hydrogen Bonds 3.37 View
7C8V A-B R59 N501 Hydrogen Bonds 2.90 View
7C8V_africa_mut A-B S31 K484 Hydrogen Bonds 3.78 View
7C8V_africa_mut A-B W47 Y501 Hydrophobic 4.21 View
7C8V_africa_mut A-B W47 Y501 Hydrophobic 3.98 View
7C8V_africa_mut A-B H54 K484 Repulsive 5.82 View
7C8V_africa_mut A-B H54 K484 Repulsive, Hydrogen Bonds 4.15 View
7C8V_africa_mut A-B H54 Y489 Aromatic Stacking 4.25 View
7C8V_africa_mut A-B R59 Y501 Hydrophobic 4.19 View
7C8V_africa_mut A-B R59 Y501 Hydrophobic 4.32 View
7C8V_africa_mut A-B W99 Y449 Hydrophobic 4.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph