VTR

15 main matches found (44 matches in total )

Execution time: 35.0 seconds

Match RMSD = 0.61

VTR = 0.04

Average AVD = 0.53 Å

Parameters

Chains(7C2L.pdb ): B versus I

Chains(7C2L_africa_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7C2L 4479 31 13 16 0 0 1 61
B7C2L_africa_mut 4470 38 5 15 0 0 1 59

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.4 View
B-I B-I K147 L32 K147 L32 Hydrogen Bonds Hydrogen Bonds 0.71 View
B-I B-I Y145 A101 Y145 A101 Hydrophobic Hydrophobic 0.42 View
B-I B-I Y248 G104 L249 G104 Hydrogen Bonds Hydrogen Bonds 1.1 View
B-I B-I W152 F109 W152 F109 Aromatic Stacking Aromatic Stacking 0.35 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.28 View
B-I B-I K150 P53 K150 P53 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-I B-I Y248 E31 Y248 E31 Hydrogen Bonds Hydrogen Bonds 0.76 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.28 View
B-I B-I Y248 V102 Y248 V102 Hydrophobic Hydrophobic 1.01 View
B-I B-I W152 F109 W152 F109 Hydrophobic Hydrophobic 0.93 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.31 View
B-I B-I W152 F109 W152 F109 Hydrophobic Hydrophobic 0.46 View
B-I B-I L249 A103 L249 A103 Hydrophobic Hydrophobic 1.68 View
B-I B-I K147 L29 K147 L29 Hydrogen Bonds Hydrogen Bonds 0.86 View
B-I B-I K147 F51 K147 F51 Hydrophobic Hydrophobic 0.41 View
B-I B-I L249 T100 L249 T100 Hydrophobic Hydrophobic 0.99 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.26 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.4 View
B-I B-I K150 E54 K150 E54 Attractive Attractive 0.26 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.34 View
B-I B-I Y248 V102 Y248 V102 Hydrophobic Hydrophobic 0.94 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.32 View
B-I B-I K147 E72 K147 E72 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.71 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.41 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.29 View
B-I B-I Y145 A101 Y145 A101 Hydrophobic Hydrophobic 0.42 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.33 View
B-I B-I H146 T30 H146 T30 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-I B-I Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.7 View
B-I B-I Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.59 View
B-I B-I Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.64 View
B-I B-I H146 T30 H146 T30 Hydrogen Bonds Hydrogen Bonds 0.24 View
B-I B-I K150 Y111 K150 Y111 Hydrogen Bonds Hydrogen Bonds 0.38 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.33 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.33 View
B-I B-I H146 T30 H146 T30 Hydrogen Bonds Hydrogen Bonds 0.16 View
B-I B-I K147 E72 K147 E72 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.83 View
B-I B-I W152 P106 W152 P106 Hydrophobic Hydrophobic 0.23 View
B-I B-I W152 V102 W152 V102 Hydrophobic Hydrophobic 0.41 View
B-I B-I V143 P106 V143 P106 Hydrophobic Hydrophobic 0.35 View
B-I B-I K150 E54 K150 E54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.31 View
B-I B-I K147 T30 K147 T30 Hydrogen Bonds Hydrogen Bonds 1.01 View
B-I B-I Y145 V102 Y145 V102 Hydrophobic Hydrophobic 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7C2L | 7C2L_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7C2L B-I H245 P106 Hydrophobic 3.89 View
7C2L B-I R246 E1 Attractive 5.64 View
7C2L B-I R246 G26 Hydrogen Bonds 3.59 View
7C2L B-I R246 E31 Attractive 5.35 View
7C2L B-I R246 E31 Attractive 4.74 View
7C2L B-I R246 E31 Attractive 5.13 View
7C2L B-I R246 E31 Attractive 4.00 View
7C2L B-I R246 E31 Attractive 4.78 View
7C2L B-I R246 E31 Attractive, Hydrogen Bonds 3.44 View
7C2L B-I R246 E31 Attractive 5.72 View
7C2L B-I R246 E31 Attractive 4.36 View
7C2L B-I S247 Y27 Hydrogen Bonds 3.75 View
7C2L B-I L249 Y112 Hydrophobic 4.48 View
7C2L_africa_mut B-I Y144 T30 Hydrophobic 4.36 View
7C2L_africa_mut B-I Y144 T30 Hydrophobic 3.97 View
7C2L_africa_mut B-I Y145 F109 Hydrophobic 4.35 View
7C2L_africa_mut B-I Y145 F109 Hydrophobic 4.18 View
7C2L_africa_mut B-I K147 A101 Hydrophobic 4.46 View
7C2L_africa_mut B-I R158 E31 Attractive 5.71 View
7C2L_africa_mut B-I Y248 G104 Hydrogen Bonds 3.83 View
7C2L_africa_mut B-I L249 T100 Hydrophobic 4.43 View
7C2L_africa_mut B-I L249 T100 Hydrophobic 3.63 View
7C2L_africa_mut B-I L249 A103 Hydrophobic 3.80 View
7C2L_africa_mut B-I L249 A103 Hydrophobic 4.11 View
7C2L_africa_mut B-I S256 E1 Hydrogen Bonds 3.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph