VTR

17 main matches found (19 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.39

VTR = 0.02

Average AVD = 0.37 Å

Parameters

Chains(7C01.pdb ): B versus L

Chains(7C01_africa_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7C01 1256 2 7 12 0 1 0 22
B7C01_africa_mut 1256 5 8 12 0 1 0 26

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-B L-B V15 R346 V15 R346 Hydrogen Bonds Hydrogen Bonds 0.34 View
L-B L-B G16 R346 G16 R346 Hydrogen Bonds Hydrogen Bonds 0.32 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.23 View
L-B L-B S7 G446 S7 G446 Hydrogen Bonds Hydrogen Bonds 0.51 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.24 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.35 View
L-B L-B K109 K444 K109 K444 Repulsive Repulsive 0.48 View
L-B L-B R18 N450 R18 N450 Hydrogen Bonds Hydrogen Bonds 0.23 View
L-B L-B D17 K444 D17 K444 Attractive Attractive 0.54 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.43 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.38 View
L-B L-B D17 R346 D17 R346 Attractive Attractive Hydrogen Bonds 0.41 View
L-B L-B T20 Y449 T20 Y449 Hydrogen Bonds Hydrogen Bonds 0.45 View
L-B L-B L11 K444 L11 K444 Hydrophobic Hydrophobic 0.35 View
L-B L-B T20 Y449 T20 Y449 Hydrophobic Hydrophobic 0.43 View
L-B L-B D17 R346 D17 R346 Attractive Attractive 0.56 View
L-B L-B T20 N450 T20 N450 Hydrogen Bonds Hydrogen Bonds 0.27 View
L-B L-B D17 R346 D17 R346 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.3 View
L-B L-B T20 N450 T20 N450 Hydrogen Bonds Hydrogen Bonds 0.25 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7C01 | 7C01_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7C01 L-B G66 E484 Hydrogen Bonds 3.71 View
7C01 L-B S67 E484 Hydrogen Bonds 3.82 View
7C01_africa_mut L-B L11 K444 Hydrophobic 4.49 View
7C01_africa_mut L-B L11 K444 Hydrophobic 4.41 View
7C01_africa_mut L-B D17 R346 Attractive 5.97 View
7C01_africa_mut L-B T20 Y449 Hydrophobic 4.22 View
7C01_africa_mut L-B T20 N450 Hydrogen Bonds 3.79 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph