VTR

15 main matches found (23 matches in total )

Execution time: 26.0 seconds

Match RMSD = 0.72

VTR = 0.04

Average AVD = 0.65 Å

Parameters

Chains(7BYR.pdb ): B versus H

Chains(7BYR_africa_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BYR 3137 8 1 14 0 0 3 26
B7BYR_africa_mut 3130 13 0 17 0 0 3 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H Y449 L72 Y449 L72 Hydrogen Bonds Hydrogen Bonds 0.75 View
B-H B-H Y489 Y32 Y489 Y32 Aromatic Stacking Aromatic Stacking 0.2 View
B-H B-H F486 Q100 F486 Q100 Hydrophobic Hydrophobic 0.51 View
B-H B-H F490 W105 F490 W105 Aromatic Stacking Aromatic Stacking 0.51 View
B-H B-H Q493 T30 Q493 T30 Hydrogen Bonds Hydrogen Bonds 1.36 View
B-H B-H F486 Q100 F486 Q100 Hydrophobic Hydrophobic 0.22 View
B-H B-H F486 Q100 F486 Q100 Hydrophobic Hydrophobic 0.14 View
B-H B-H Q498 D73 Q498 D73 Hydrogen Bonds Hydrogen Bonds 0.88 View
B-H B-H S494 N54 S494 N54 Hydrogen Bonds Hydrogen Bonds 0.95 View
B-H B-H Y489 S31 Y489 S31 Hydrogen Bonds Hydrogen Bonds 0.76 View
B-H B-H Y489 Y32 Y489 Y32 Hydrophobic Hydrophobic 0.74 View
B-H B-H L492 N54 L492 N54 Hydrogen Bonds Hydrogen Bonds 0.56 View
B-H B-H Q493 N54 Q493 N54 Hydrogen Bonds Hydrogen Bonds 0.9 View
B-H B-H S494 N54 S494 N54 Hydrogen Bonds Hydrogen Bonds 0.8 View
B-H B-H Y489 Y32 Y489 Y32 Hydrophobic Hydrophobic 0.76 View
B-H B-H F486 Y111 F486 Y111 Aromatic Stacking Aromatic Stacking 0.6 View
B-H B-H S494 T53 S494 T53 Hydrogen Bonds Hydrogen Bonds 0.67 View
B-H B-H S494 N54 S494 N54 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-H B-H Y489 Y32 Y489 Y32 Hydrogen Bonds Hydrogen Bonds 0.46 View
B-H B-H F486 Q100 F486 Q100 Hydrophobic Hydrophobic 0.43 View
B-H B-H Q498 D73 Q498 D73 Hydrogen Bonds Hydrogen Bonds 1.24 View
B-H B-H Y489 Y32 Y489 Y32 Hydrophobic Hydrophobic 0.77 View
B-H B-H F486 Q100 F486 Q100 Hydrophobic Hydrophobic 0.14 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BYR | 7BYR_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BYR B-H E484 R107 Attractive 5.84 View
7BYR B-H F486 Y111 Hydrogen Bonds 3.62 View
7BYR B-H Q493 T30 Hydrogen Bonds 3.19 View
7BYR_africa_mut B-H Y449 L72 Hydrophobic 4.41 View
7BYR_africa_mut B-H Y449 L72 Hydrophobic 4.48 View
7BYR_africa_mut B-H Y449 L72 Hydrophobic 4.34 View
7BYR_africa_mut B-H K484 S103 Hydrogen Bonds 2.93 View
7BYR_africa_mut B-H K484 S103 Hydrogen Bonds 2.68 View
7BYR_africa_mut B-H K484 Y111 Hydrogen Bonds 3.64 View
7BYR_africa_mut B-H F486 Y111 Hydrophobic 4.00 View
7BYR_africa_mut B-H F486 Y111 Hydrophobic 4.29 View
7BYR_africa_mut B-H Q493 T30 Hydrogen Bonds 3.84 View
7BYR_africa_mut B-H T500 D73 Hydrogen Bonds 3.53 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph