VTR

12 main matches found (26 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.53

VTR = 0.02

Average AVD = 0.46 Å

Parameters

Chains(7BWJ.pdb ): E versus H

Chains(7BWJ_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BWJ 636 14 7 9 0 3 1 34
B7BWJ_africa_mut 636 17 0 7 0 5 1 30

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-H E-H F490 V105 F490 V105 Hydrophobic Hydrophobic 0.72 View
E-H E-H F490 V106 F490 V106 Hydrophobic Hydrophobic 0.47 View
E-H E-H L452 I103 L452 I103 Hydrophobic Hydrophobic 0.25 View
E-H E-H L452 V105 L452 V105 Hydrophobic Hydrophobic 0.57 View
E-H E-H L452 I103 L452 I103 Hydrophobic Hydrophobic 0.36 View
E-H E-H N450 H54 N450 H54 Hydrogen Bonds Hydrogen Bonds 0.32 View
E-H E-H R346 H54 R346 H54 Repulsive Repulsive 0.44 View
E-H E-H L452 I103 L452 I103 Hydrophobic Hydrophobic 0.18 View
E-H E-H R346 H54 R346 H54 Repulsive Repulsive 0.4 View
E-H E-H N450 S31 N450 S31 Hydrogen Bonds Hydrogen Bonds 0.51 View
E-H E-H L452 V105 L452 V105 Hydrophobic Hydrophobic 0.6 View
E-H E-H G447 Y27 G447 Y27 Hydrogen Bonds Hydrogen Bonds 0.22 View
E-H E-H F490 P107 F490 P107 Hydrophobic Hydrophobic 0.4 View
E-H E-H F490 P107 F490 P107 Hydrophobic Hydrophobic 0.51 View
E-H E-H N450 S30 N450 S30 Hydrogen Bonds Hydrogen Bonds 0.23 View
E-H E-H Y449 Y33 Y449 Y33 Hydrophobic Hydrophobic 0.37 View
E-H E-H L452 I103 L452 I103 Hydrophobic Hydrophobic 0.29 View
E-H E-H E484 R112 K484 R112 Attractive Repulsive 1.58 View
E-H E-H Y449 Y33 Y449 Y33 Hydrogen Bonds Hydrogen Bonds 0.51 View
E-H E-H Y449 Y33 Y449 Y33 Hydrophobic Hydrophobic 0.37 View
E-H E-H N450 H54 N450 H54 Hydrogen Bonds Hydrogen Bonds 0.41 View
E-H E-H F490 V105 F490 V105 Hydrophobic Hydrophobic 0.71 View
E-H E-H F490 V106 F490 V106 Hydrophobic Hydrophobic 0.39 View
E-H E-H Y449 S31 Y449 S31 Hydrogen Bonds Hydrogen Bonds 0.46 View
E-H E-H R346 H54 R346 H54 Repulsive Repulsive 0.45 View
E-H E-H Y449 Y33 Y449 Y33 Aromatic Stacking Aromatic Stacking 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BWJ | 7BWJ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BWJ E-H E484 R112 Attractive 5.23 View
7BWJ E-H E484 R112 Attractive 4.91 View
7BWJ E-H E484 R112 Attractive 5.39 View
7BWJ E-H E484 R112 Attractive 4.13 View
7BWJ E-H E484 R112 Attractive, Hydrogen Bonds 3.56 View
7BWJ E-H E484 R112 Attractive, Hydrogen Bonds 3.82 View
7BWJ_africa_mut E-H R346 H54 Repulsive 5.94 View
7BWJ_africa_mut E-H Y449 Y33 Hydrophobic 4.30 View
7BWJ_africa_mut E-H Y449 Y33 Hydrophobic 4.32 View
7BWJ_africa_mut E-H L452 V105 Hydrophobic 4.23 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph