VTR

7 main matches found (35 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.68

VTR = 0.02

Average AVD = 0.46 Å

Parameters

Chains(7BEP.pdb ): C versus D

Chains(7BEP_africa_mut.pdb ) C versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEP 2175 28 8 6 0 0 1 43
B7BEP_africa_mut 2175 31 0 2 0 4 1 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-D C-D E484 R52 K484 R52 Attractive Repulsive 1.69 View
C-D C-D F490 T57 F490 T57 Hydrophobic Hydrophobic 0.2 View
C-D C-D V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.14 View
C-D C-D F456 L105 F456 L105 Hydrophobic Hydrophobic 0.3 View
C-D C-D F490 H56 F490 H56 Hydrophobic Hydrophobic 0.31 View
C-D C-D V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.14 View
C-D C-D L455 F104 L455 F104 Hydrophobic Hydrophobic 0.58 View
C-D C-D E484 Y59 K484 Y59 Hydrogen Bonds Hydrogen Bonds 0.18 View
C-D C-D V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.1 View
C-D C-D E484 Y59 K484 Y59 Hydrophobic Hydrophobic 0.98 View
C-D C-D L455 F104 L455 F104 Hydrophobic Hydrophobic 0.46 View
C-D C-D F490 T57 F490 T57 Hydrophobic Hydrophobic 0.16 View
C-D C-D F486 W107 F486 W107 Hydrophobic Hydrophobic 0.14 View
C-D C-D E484 R52 K484 R52 Attractive Repulsive 1.78 View
C-D C-D F490 H56 F490 H56 Hydrophobic Hydrophobic 0.3 View
C-D C-D F456 F104 F456 F104 Hydrophobic Hydrophobic 0.26 View
C-D C-D F490 T57 F490 T57 Hydrophobic Hydrophobic 0.21 View
C-D C-D I472 T57 I472 T57 Hydrophobic Hydrophobic 0.2 View
C-D C-D E484 T57 K484 T57 Hydrophobic Hydrophobic 1.05 View
C-D C-D F490 T57 F490 T57 Hydrophobic Hydrophobic 0.2 View
C-D C-D F490 H56 F490 H56 Hydrophobic Hydrophobic 0.35 View
C-D C-D F456 F104 F456 F104 Hydrophobic Hydrophobic 0.27 View
C-D C-D E484 R52 K484 R52 Attractive Hydrogen Bonds Repulsive 1.69 View
C-D C-D Y489 L105 Y489 L105 Hydrophobic Hydrophobic 0.41 View
C-D C-D L455 F104 L455 F104 Hydrophobic Hydrophobic 0.25 View
C-D C-D F486 W107 F486 W107 Hydrophobic Hydrophobic 0.17 View
C-D C-D F490 H56 F490 H56 Hydrophobic Hydrophobic 0.22 View
C-D C-D F490 H56 F490 H56 Aromatic Stacking Aromatic Stacking 0.35 View
C-D C-D F486 W107 F486 W107 Hydrophobic Hydrophobic 0.15 View
C-D C-D E484 R52 K484 R52 Attractive Repulsive 1.76 View
C-D C-D F456 L105 F456 L105 Hydrophobic Hydrophobic 0.31 View
C-D C-D V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.07 View
C-D C-D L455 F104 L455 F104 Hydrophobic Hydrophobic 0.54 View
C-D C-D G482 Y59 G482 Y59 Hydrogen Bonds Hydrogen Bonds 0.18 View
C-D C-D V483 Y59 V483 Y59 Hydrophobic Hydrophobic 0.07 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEP | 7BEP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BEP C-D E484 Y50 Hydrogen Bonds 2.37 View
7BEP C-D E484 R52 Attractive, Hydrogen Bonds 3.23 View
7BEP C-D E484 R52 Attractive 4.31 View
7BEP C-D E484 R52 Attractive 4.96 View
7BEP C-D E484 R52 Attractive 5.09 View
7BEP C-D E484 T57 Hydrogen Bonds 3.49 View
7BEP_africa_mut C-D L455 F104 Hydrophobic 4.42 View
7BEP_africa_mut C-D K484 W107 Hydrophobic 4.41 View
7BEP_africa_mut C-D Y489 L105 Hydrophobic 4.17 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph