VTR

2 main matches found (15 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.43

VTR = 0.0

Average AVD = 0.42 Å

Parameters

Chains(7BEO.pdb ): R versus L

Chains(7BEO_africa_mut.pdb ) R versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEO 2105 13 0 1 0 0 1 15
B7BEO_africa_mut 2105 13 0 1 0 0 1 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.42 View
R-L R-L F486 W97 F486 W97 Hydrophobic Hydrophobic 0.29 View
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.58 View
R-L R-L F486 W97 F486 W97 Hydrophobic Hydrophobic 0.31 View
R-L R-L T478 Y33 T478 Y33 Hydrogen Bonds Hydrogen Bonds 0.37 View
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.49 View
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.41 View
R-L R-L F486 W97 F486 W97 Hydrophobic Hydrophobic 0.34 View
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.51 View
R-L R-L F486 Y33 F486 Y33 Hydrophobic Hydrophobic 0.5 View
R-L R-L F486 W97 F486 W97 Hydrophobic Hydrophobic 0.26 View
R-L R-L F486 W97 F486 W97 Hydrophobic Hydrophobic 0.3 View
R-L R-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.55 View
R-L R-L F486 Y33 F486 Y33 Hydrophobic Hydrophobic 0.56 View
R-L R-L F486 Y92 F486 Y92 Aromatic Stacking Aromatic Stacking 0.35 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEO | 7BEO_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph