VTR

15 main matches found (26 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.57

VTR = 0.03

Average AVD = 0.51 Å

Parameters

Chains(7BEK.pdb ): E versus L

Chains(7BEK_africa_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEK 628 11 0 16 0 0 1 28
B7BEK_africa_mut 628 18 0 17 0 0 1 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-E L-E Y32 Y505 Y32 Y505 Aromatic Stacking Aromatic Stacking 0.36 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.69 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.62 View
L-E L-E S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.38 View
L-E L-E Y94 D405 Y94 D405 Hydrophobic Hydrophobic 0.44 View
L-E L-E N92 Y505 N92 Y505 Hydrogen Bonds Hydrogen Bonds 0.31 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.63 View
L-E L-E Y94 D405 Y94 D405 Hydrogen Bonds Hydrogen Bonds 0.47 View
L-E L-E Y94 Q409 Y94 Q409 Hydrogen Bonds Hydrogen Bonds 0.35 View
L-E L-E I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.71 View
L-E L-E Y32 G496 Y32 G496 Hydrogen Bonds Hydrogen Bonds 0.23 View
L-E L-E S30 Q498 S30 Q498 Hydrogen Bonds Hydrogen Bonds 0.37 View
L-E L-E G28 G502 G28 G502 Hydrogen Bonds Hydrogen Bonds 1.32 View
L-E L-E N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.18 View
L-E L-E S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.3 View
L-E L-E G28 T500 G28 T500 Hydrogen Bonds Hydrogen Bonds 0.62 View
L-E L-E I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.71 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.68 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.58 View
L-E L-E N92 Y453 N92 Y453 Hydrogen Bonds Hydrogen Bonds 0.32 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.74 View
L-E L-E N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-E L-E S30 G496 S30 G496 Hydrogen Bonds Hydrogen Bonds 0.48 View
L-E L-E I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.74 View
L-E L-E Q90 Y505 Q90 Y505 Hydrogen Bonds Hydrogen Bonds 0.33 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.59 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEK | 7BEK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BEK L-E S30 N501 Hydrogen Bonds 3.33 View
7BEK L-E N92 K417 Hydrogen Bonds 3.61 View
7BEK_africa_mut L-E I2 Y501 Hydrophobic 4.37 View
7BEK_africa_mut L-E I2 Y501 Hydrophobic 3.52 View
7BEK_africa_mut L-E Q27 Y501 Hydrophobic 4.48 View
7BEK_africa_mut L-E Q27 Y501 Hydrophobic 4.08 View
7BEK_africa_mut L-E Q27 Y501 Hydrophobic 3.96 View
7BEK_africa_mut L-E Q27 Y501 Hydrophobic 3.15 View
7BEK_africa_mut L-E Q27 Y501 Hydrogen Bonds 2.57 View
7BEK_africa_mut L-E G28 Y501 Hydrogen Bonds 3.39 View
7BEK_africa_mut L-E I29 Y501 Hydrophobic 4.17 View
7BEK_africa_mut L-E Y32 G496 Hydrogen Bonds 3.71 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph