VTR

16 main matches found (30 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.44

VTR = 0.01

Average AVD = 0.4 Å

Parameters

Chains(7BEK.pdb ): E versus H

Chains(7BEK_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEK 628 14 0 16 0 0 1 31
B7BEK_africa_mut 628 15 0 18 0 0 1 34

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-E H-E Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.31 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.5 View
H-E H-E Y52 K417 Y52 N417 Hydrophobic Hydrophobic 1.24 View
H-E H-E L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.41 View
H-E H-E G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.39 View
H-E H-E Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.67 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.33 View
H-E H-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.32 View
H-E H-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.21 View
H-E H-E L99 Y489 L99 Y489 Hydrophobic Hydrophobic 0.53 View
H-E H-E T28 A475 T28 A475 Hydrogen Bonds Hydrogen Bonds 0.56 View
H-E H-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.11 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.33 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.31 View
H-E H-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.22 View
H-E H-E T28 G476 T28 G476 Hydrogen Bonds Hydrogen Bonds 0.5 View
H-E H-E T28 S477 T28 S477 Hydrogen Bonds Hydrogen Bonds 0.29 View
H-E H-E Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.27 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.49 View
H-E H-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.28 View
H-E H-E Y33 F456 Y33 F456 Aromatic Stacking Aromatic Stacking 0.27 View
H-E H-E S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.42 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.46 View
H-E H-E G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.33 View
H-E H-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.12 View
H-E H-E N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.57 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.31 View
H-E H-E G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.37 View
H-E H-E V106 F486 V106 F486 Hydrophobic Hydrophobic 0.34 View
H-E H-E Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEK | 7BEK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BEK H-E G100 K417 Hydrogen Bonds 2.60 View
7BEK_africa_mut H-E T28 A475 Hydrogen Bonds 3.46 View
7BEK_africa_mut H-E S31 A475 Hydrogen Bonds 3.86 View
7BEK_africa_mut H-E Y33 N417 Hydrogen Bonds 2.99 View
7BEK_africa_mut H-E P53 Y421 Hydrophobic 4.48 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph