VTR

21 main matches found (31 matches in total )

Execution time: 34.0 seconds

Match RMSD = 0.55

VTR = 0.01

Average AVD = 0.5 Å

Parameters

Chains(7A5S.pdb ): B versus I

Chains(7A5S_africa_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7A5S 2124 10 11 9 0 0 1 31
B7A5S_africa_mut 2118 15 11 11 0 0 1 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-I B-I R408 D55 R408 D55 Attractive Attractive Hydrogen Bonds 0.3 View
B-I B-I K378 D55 K378 D55 Attractive Attractive 0.39 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.31 View
B-I B-I T385 S100 T385 S100 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-I B-I K386 D107 K386 D107 Attractive Attractive 0.64 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.29 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.31 View
B-I B-I Y380 I102 Y380 I102 Hydrophobic Hydrophobic 0.47 View
B-I B-I Y369 Y27 Y369 Y27 Hydrophobic Hydrophobic 0.79 View
B-I B-I G381 I102 G381 I102 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-I B-I F377 T31 F377 T31 Hydrogen Bonds Hydrogen Bonds 0.86 View
B-I B-I K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.79 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.28 View
B-I B-I Y369 Y27 Y369 Y27 Aromatic Stacking Aromatic Stacking 0.23 View
B-I B-I K378 W33 K378 W33 Hydrogen Bonds Hydrogen Bonds 0.17 View
B-I B-I Y369 Y27 Y369 Y27 Hydrophobic Hydrophobic 0.78 View
B-I B-I K378 E57 K378 E57 Attractive Attractive 0.36 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.32 View
B-I B-I F377 I30 F377 I30 Hydrophobic Hydrophobic 0.6 View
B-I B-I K378 W33 K378 W33 Hydrophobic Hydrophobic 0.48 View
B-I B-I F377 Y52 F377 Y52 Hydrogen Bonds Hydrogen Bonds 0.6 View
B-I B-I S383 T104 S383 T104 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-I B-I Y380 I102 Y380 I102 Hydrophobic Hydrophobic 0.53 View
B-I B-I N370 I30 N370 I30 Hydrophobic Hydrophobic 0.6 View
B-I B-I T385 Y32 T385 Y32 Hydrogen Bonds Hydrogen Bonds 0.39 View
B-I B-I T376 Y52 T376 Y52 Hydrophobic Hydrophobic 1.13 View
B-I B-I R408 D55 R408 D55 Attractive Attractive 0.33 View
B-I B-I K386 D107 K386 D107 Attractive Attractive 0.88 View
B-I B-I K378 T31 K378 T31 Hydrogen Bonds Hydrogen Bonds 0.59 View
B-I B-I F377 Y52 F377 Y52 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-I B-I P384 T31 P384 T31 Hydrophobic Hydrophobic 0.6 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7A5S | 7A5S_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7A5S_africa_mut B-I Y369 Y27 Hydrophobic 4.43 View
7A5S_africa_mut B-I Y369 Y27 Hydrophobic 4.40 View
7A5S_africa_mut B-I Y369 Y27 Hydrophobic 4.25 View
7A5S_africa_mut B-I Y380 I102 Hydrophobic 3.80 View
7A5S_africa_mut B-I Y380 I102 Hydrophobic 3.95 View
7A5S_africa_mut B-I S383 S100 Hydrogen Bonds 3.82 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph