VTR

9 main matches found (21 matches in total )

Execution time: 35.0 seconds

Match RMSD = 0.58

VTR = 0.0

Average AVD = 0.52 Å

Parameters

Chains(7A5S.pdb ): A versus L

Chains(7A5S_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7A5S 2124 12 2 7 0 0 0 21
B7A5S_africa_mut 2118 13 2 7 0 0 0 22

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A W56 L390 W56 L390 Hydrophobic Hydrophobic 0.42 View
L-A L-A Y31 D428 Y31 D428 Hydrophobic Hydrophobic 0.56 View
L-A L-A S83 R44 S83 R44 Hydrogen Bonds Hydrogen Bonds 0.32 View
L-A L-A S33 T430 S33 T430 Hydrogen Bonds Hydrogen Bonds 0.63 View
L-A L-A Y31 F429 Y31 F429 Hydrogen Bonds Hydrogen Bonds 0.59 View
L-A L-A Y31 T430 Y31 T430 Hydrophobic Hydrophobic 0.72 View
L-A L-A G16 F43 G16 F43 Hydrogen Bonds Hydrogen Bonds 0.27 View
L-A L-A Y38 G381 Y38 G381 Hydrogen Bonds Hydrogen Bonds 0.41 View
L-A L-A I34 T430 I34 T430 Hydrophobic Hydrophobic 1.18 View
L-A L-A E61 K386 E61 K386 Attractive Attractive 0.47 View
L-A L-A L15 F43 L15 F43 Hydrophobic Hydrophobic 0.45 View
L-A L-A G16 S45 G16 S45 Hydrogen Bonds Hydrogen Bonds 0.23 View
L-A L-A Y31 F429 Y31 F429 Hydrogen Bonds Hydrogen Bonds 0.84 View
L-A L-A W56 L390 W56 L390 Hydrophobic Hydrophobic 0.42 View
L-A L-A I34 T430 I34 T430 Hydrophobic Hydrophobic 0.99 View
L-A L-A Y31 T430 Y31 T430 Hydrophobic Hydrophobic 0.79 View
L-A L-A R67 V42 R67 V42 Hydrophobic Hydrophobic 0.2 View
L-A L-A E61 K386 E61 K386 Attractive Attractive 0.41 View
L-A L-A Q85 V42 Q85 V42 Hydrophobic Hydrophobic 0.45 View
L-A L-A R67 V42 R67 V42 Hydrophobic Hydrophobic 0.21 View
L-A L-A L15 F43 L15 F43 Hydrophobic Hydrophobic 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7A5S | 7A5S_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7A5S_africa_mut L-A Y31 D428 Hydrophobic 4.42 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph