VTR

4 main matches found (19 matches in total )

Execution time: 33.0 seconds

Match RMSD = 0.47

VTR = 0.01

Average AVD = 0.45 Å

Parameters

Chains(7A5S.pdb ): A versus I

Chains(7A5S_africa_mut.pdb ) A versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7A5S 2124 15 0 3 0 0 1 19
B7A5S_africa_mut 2118 15 0 4 0 1 1 21

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-I A-I Y505 S17 Y505 S17 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.59 View
A-I A-I F486 K121 F486 K121 Hydrophobic Hydrophobic 0.35 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.37 View
A-I A-I N487 S119 N487 S119 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.48 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.68 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.58 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.36 View
A-I A-I F486 F150 F486 F150 Aromatic Stacking Aromatic Stacking 0.48 View
A-I A-I F486 F150 F486 F150 Hydrophobic Hydrophobic 0.26 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.55 View
A-I A-I Q493 E16 Q493 E16 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.63 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.48 View
A-I A-I F486 K121 F486 K121 Hydrophobic Hydrophobic 0.37 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.42 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.41 View
A-I A-I F486 L179 F486 L179 Hydrophobic Hydrophobic 0.59 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7A5S | 7A5S_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7A5S_africa_mut A-I K484 K13 Repulsive 5.48 View
7A5S_africa_mut A-I G485 S119 Hydrogen Bonds 3.70 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph