VTR

18 main matches found (22 matches in total )

Execution time: 16.0 seconds

Match RMSD = 0.52

VTR = 0.02

Average AVD = 0.49 Å

Parameters

Chains(7A5R.pdb ): A versus H

Chains(7A5R_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7A5R 1358 5 10 8 0 0 0 23
B7A5R_africa_mut 1358 9 10 8 0 0 0 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-A H-A Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.62 View
H-A H-A Y27 Y369 Y27 Y369 Hydrophobic Hydrophobic 0.83 View
H-A H-A I102 Y380 I102 Y380 Hydrophobic Hydrophobic 0.46 View
H-A H-A T104 S383 T104 S383 Hydrogen Bonds Hydrogen Bonds 0.51 View
H-A H-A E57 K378 E57 K378 Attractive Attractive 0.37 View
H-A H-A I102 G381 I102 G381 Hydrogen Bonds Hydrogen Bonds 0.33 View
H-A H-A T31 P384 T31 P384 Hydrophobic Hydrophobic 0.6 View
H-A H-A T31 K378 T31 K378 Hydrogen Bonds Hydrogen Bonds 0.59 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.34 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.34 View
H-A H-A D107 K386 D107 K386 Attractive Attractive 0.87 View
H-A H-A I30 N370 I30 N370 Hydrophobic Hydrophobic 0.61 View
H-A H-A S100 T385 S100 T385 Hydrogen Bonds Hydrogen Bonds 0.55 View
H-A H-A W33 K378 W33 K378 Hydrogen Bonds Hydrogen Bonds 0.17 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.36 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.34 View
H-A H-A T31 F377 T31 F377 Hydrogen Bonds Hydrogen Bonds 0.82 View
H-A H-A Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.46 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.38 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.36 View
H-A H-A D55 R408 D55 R408 Attractive Attractive 0.37 View
H-A H-A D55 K378 D55 K378 Attractive Attractive 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7A5R | 7A5R_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7A5R H-A Y52 K378 Hydrophobic 4.42 View
7A5R_africa_mut H-A Y27 Y369 Hydrophobic 4.21 View
7A5R_africa_mut H-A I30 F377 Hydrophobic 3.97 View
7A5R_africa_mut H-A Y52 T376 Hydrophobic 4.37 View
7A5R_africa_mut H-A I102 Y380 Hydrophobic 4.03 View
7A5R_africa_mut H-A I102 Y380 Hydrophobic 4.21 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph