VTR

16 main matches found (42 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.46

VTR = 0.01

Average AVD = 0.4 Å

Parameters

Chains(6ZFO.pdb ): E versus H

Chains(6ZFO_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZFO 1252 26 3 13 0 0 1 43
B6ZFO_africa_mut 1252 29 3 14 0 0 1 47

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-H E-H S383 Y106 S383 Y106 Hydrogen Bonds Hydrogen Bonds 0.11 View
E-H E-H K386 D99 K386 D99 Attractive Attractive 0.57 View
E-H E-H L390 W104 L390 W104 Hydrophobic Hydrophobic 0.87 View
E-H E-H S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.42 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.13 View
E-H E-H K386 V105 K386 V105 Hydrogen Bonds Hydrogen Bonds 0.68 View
E-H E-H T385 Y106 T385 Y106 Hydrogen Bonds Hydrogen Bonds 0.31 View
E-H E-H L390 W104 L390 W104 Hydrophobic Hydrophobic 0.82 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.33 View
E-H E-H L517 W104 L517 W104 Hydrophobic Hydrophobic 0.63 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.14 View
E-H E-H T385 D33 T385 D33 Hydrogen Bonds Hydrogen Bonds 0.35 View
E-H E-H F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.22 View
E-H E-H V382 W104 V382 W104 Hydrophobic Hydrophobic 0.32 View
E-H E-H T385 Y59 T385 Y59 Hydrophobic Hydrophobic 0.21 View
E-H E-H V382 W104 V382 W104 Hydrophobic Hydrophobic 0.33 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.2 View
E-H E-H K386 D33 K386 D33 Attractive Attractive 0.52 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.29 View
E-H E-H T385 D33 T385 D33 Hydrogen Bonds Hydrogen Bonds 0.38 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.15 View
E-H E-H K386 D99 K386 D99 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.54 View
E-H E-H L517 W104 L517 W104 Hydrophobic Hydrophobic 0.58 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.2 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.37 View
E-H E-H Y369 N57 Y369 N57 Hydrogen Bonds Hydrogen Bonds 0.28 View
E-H E-H L390 W104 L390 W104 Hydrophobic Hydrophobic 0.87 View
E-H E-H F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.21 View
E-H E-H K386 L103 K386 L103 Hydrogen Bonds Hydrogen Bonds 0.61 View
E-H E-H P384 Y59 P384 Y59 Hydrophobic Hydrophobic 0.09 View
E-H E-H F377 Y59 F377 Y59 Aromatic Stacking Aromatic Stacking 0.26 View
E-H E-H N388 Y53 N388 Y53 Hydrogen Bonds Hydrogen Bonds 0.49 View
E-H E-H L390 W104 L390 W104 Hydrophobic Hydrophobic 0.84 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.34 View
E-H E-H S375 K65 S375 K65 Hydrogen Bonds Hydrogen Bonds 0.42 View
E-H E-H S383 W104 S383 W104 Hydrogen Bonds Hydrogen Bonds 0.44 View
E-H E-H T385 N57 T385 N57 Hydrophobic Hydrophobic 0.16 View
E-H E-H T385 Y106 T385 Y106 Hydrogen Bonds Hydrogen Bonds 0.48 View
E-H E-H F377 Y59 F377 Y59 Hydrophobic Hydrophobic 0.34 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.3 View
E-H E-H L390 W104 L390 W104 Hydrophobic Hydrophobic 0.79 View
E-H E-H F392 W104 F392 W104 Hydrophobic Hydrophobic 0.3 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZFO | 6ZFO_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZFO_africa_mut E-H Y369 N57 Hydrophobic 3.99 View
6ZFO_africa_mut E-H Y369 N57 Hydrophobic 4.34 View
6ZFO_africa_mut E-H T385 Y59 Hydrophobic 4.45 View
6ZFO_africa_mut E-H K386 W104 Hydrogen Bonds 3.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph