VTR

12 main matches found (25 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.49

VTR = 0.01

Average AVD = 0.43 Å

Parameters

Chains(6ZER.pdb ): D versus G

Chains(6ZER_africa_mut.pdb ) D versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZER 1896 13 1 10 0 0 1 25
B6ZER_africa_mut 1896 18 1 11 0 0 1 31

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-G D-G Y380 Y92 Y380 Y92 Aromatic Stacking Aromatic Stacking 0.31 View
D-G D-G P384 L95 P384 L95 Hydrophobic Hydrophobic 0.67 View
D-G D-G K378 D1 K378 D1 Attractive Attractive 0.43 View
D-G D-G K378 L95 K378 L95 Hydrophobic Hydrophobic 0.36 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.74 View
D-G D-G C379 T94 C379 T94 Hydrogen Bonds Hydrogen Bonds 0.26 View
D-G D-G P412 Y92 P412 Y92 Hydrophobic Hydrophobic 0.45 View
D-G D-G C379 L95 C379 L95 Hydrophobic Hydrophobic 0.59 View
D-G D-G G381 Y92 G381 Y92 Hydrogen Bonds Hydrogen Bonds 0.21 View
D-G D-G F377 L95 F377 L95 Hydrophobic Hydrophobic 1.06 View
D-G D-G C379 T94 C379 T94 Hydrogen Bonds Hydrogen Bonds 0.2 View
D-G D-G K378 L95 K378 L95 Hydrophobic Hydrophobic 0.37 View
D-G D-G F429 Y92 F429 Y92 Hydrogen Bonds Hydrogen Bonds 0.27 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.25 View
D-G D-G P384 L95 P384 L95 Hydrophobic Hydrophobic 0.4 View
D-G D-G G381 Y32 G381 Y32 Hydrogen Bonds Hydrogen Bonds 0.44 View
D-G D-G F377 L95 F377 L95 Hydrophobic Hydrophobic 0.98 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.29 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.25 View
D-G D-G V382 T94 V382 T94 Hydrogen Bonds Hydrogen Bonds 0.27 View
D-G D-G F429 Y92 F429 Y92 Hydrogen Bonds Hydrogen Bonds 0.42 View
D-G D-G P412 Q27 P412 Q27 Hydrogen Bonds Hydrogen Bonds 0.41 View
D-G D-G C379 L95 C379 L95 Hydrogen Bonds Hydrogen Bonds 0.16 View
D-G D-G K378 A96 K378 A96 Hydrophobic Hydrophobic 0.66 View
D-G D-G D427 Y92 D427 Y92 Hydrogen Bonds Hydrogen Bonds 0.36 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZER | 6ZER_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZER_africa_mut D-G F377 L95 Hydrophobic 4.36 View
6ZER_africa_mut D-G K378 L95 Hydrophobic 4.34 View
6ZER_africa_mut D-G K378 L95 Hydrophobic 3.87 View
6ZER_africa_mut D-G K378 L95 Hydrophobic 4.46 View
6ZER_africa_mut D-G K378 L95 Hydrophobic 3.95 View
6ZER_africa_mut D-G D428 Y92 Hydrogen Bonds 3.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph