VTR

1 main matches found (2 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.6

VTR = 0.04

Average AVD = 0.6 Å

Parameters

Chains(6ZDH.pdb ): B versus G

Chains(6ZDH_africa_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZDH 4308 1 0 1 0 0 0 2
B6ZDH_africa_mut 4299 1 0 3 0 0 0 4

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G T478 T199 T478 T199 Hydrophobic Hydrophobic 0.61 View
B-G B-G S477 S196 S477 S196 Hydrogen Bonds Hydrogen Bonds 0.6 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZDH | 6ZDH_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZDH_africa_mut B-G S477 Q200 Hydrogen Bonds 3.68 View
6ZDH_africa_mut B-G T478 T199 Hydrogen Bonds 3.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph