VTR

10 main matches found (22 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.35

VTR = 0.01

Average AVD = 0.32 Å

Parameters

Chains(6ZDG.pdb ): D versus G

Chains(6ZDG_africa_mut.pdb ) D versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZDG 1884 12 2 7 0 0 1 22
B6ZDG_africa_mut 1884 15 2 9 0 0 1 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-G D-G F429 Y92 F429 Y92 Hydrogen Bonds Hydrogen Bonds 0.31 View
D-G D-G G381 Y92 G381 Y92 Hydrogen Bonds Hydrogen Bonds 0.27 View
D-G D-G K378 D1 K378 D1 Attractive Attractive 0.59 View
D-G D-G P412 Y92 P412 Y92 Hydrophobic Hydrophobic 0.32 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.22 View
D-G D-G S383 T94 S383 T94 Hydrogen Bonds Hydrogen Bonds 0.16 View
D-G D-G F377 L95 F377 L95 Hydrophobic Hydrophobic 0.6 View
D-G D-G F377 L95 F377 L95 Hydrophobic Hydrophobic 0.56 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.2 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.21 View
D-G D-G F429 Y92 F429 Y92 Hydrogen Bonds Hydrogen Bonds 0.5 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.15 View
D-G D-G G381 Y32 G381 Y32 Hydrogen Bonds Hydrogen Bonds 0.4 View
D-G D-G P384 L95 P384 L95 Hydrophobic Hydrophobic 0.34 View
D-G D-G K378 D1 K378 D1 Attractive Attractive 0.48 View
D-G D-G S383 T94 S383 T94 Hydrogen Bonds Hydrogen Bonds 0.12 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.18 View
D-G D-G P384 L95 P384 L95 Hydrophobic Hydrophobic 0.56 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.16 View
D-G D-G Y380 Y92 Y380 Y92 Hydrophobic Hydrophobic 0.16 View
D-G D-G Y380 Y92 Y380 Y92 Aromatic Stacking Aromatic Stacking 0.19 View
D-G D-G G413 Q27 G413 Q27 Hydrogen Bonds Hydrogen Bonds 0.27 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZDG | 6ZDG_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZDG_africa_mut D-G K378 L95 Hydrophobic 4.37 View
6ZDG_africa_mut D-G K378 L95 Hydrophobic 4.35 View
6ZDG_africa_mut D-G Y380 Y92 Hydrophobic 4.35 View
6ZDG_africa_mut D-G V382 T94 Hydrogen Bonds 3.66 View
6ZDG_africa_mut D-G D427 Y92 Hydrogen Bonds 3.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph