VTR

10 main matches found (13 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.3

VTR = 0.02

Average AVD = 0.28 Å

Parameters

Chains(6ZDG.pdb ): A versus L

Chains(6ZDG_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6ZDG 1884 3 0 6 0 4 0 13
B6ZDG_africa_mut 1884 5 0 9 0 5 0 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A K146 K462 K146 K462 Repulsive Repulsive 0.38 View
L-A L-A L155 R466 L155 R466 Hydrogen Bonds Hydrogen Bonds 0.18 View
L-A L-A S157 E465 S157 E465 Hydrogen Bonds Hydrogen Bonds 0.24 View
L-A L-A N153 Y396 N153 Y396 Hydrogen Bonds Hydrogen Bonds 0.23 View
L-A L-A L155 F464 L155 F464 Hydrogen Bonds Hydrogen Bonds 0.17 View
L-A L-A S157 R466 S157 R466 Hydrogen Bonds Hydrogen Bonds 0.2 View
L-A L-A N153 E516 N153 E516 Hydrogen Bonds Hydrogen Bonds 0.24 View
L-A L-A A154 W353 A154 W353 Hydrophobic Hydrophobic 0.2 View
L-A L-A A154 W353 A154 W353 Hydrophobic Hydrophobic 0.22 View
L-A L-A H190 R466 H190 R466 Repulsive Repulsive 0.42 View
L-A L-A H190 R466 H190 R466 Repulsive Repulsive 0.43 View
L-A L-A N153 Y396 N153 Y396 Hydrophobic Hydrophobic 0.41 View
L-A L-A H190 R466 H190 R466 Repulsive Repulsive 0.38 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6ZDG | 6ZDG_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6ZDG_africa_mut L-A D152 R355 Hydrogen Bonds 3.80 View
6ZDG_africa_mut L-A N153 R355 Hydrogen Bonds 3.73 View
6ZDG_africa_mut L-A L155 F464 Hydrophobic 4.41 View
6ZDG_africa_mut L-A L155 E465 Hydrophobic 4.49 View
6ZDG_africa_mut L-A K189 N354 Hydrogen Bonds 3.78 View
6ZDG_africa_mut L-A H190 R466 Repulsive 5.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph