VTR
5 main matches found
(9 matches in total )Execution time: 11.0 seconds
Match RMSD = 0.43
VTR = 0.03
Average AVD = 0.39 Å
Parameters
Chains(6ZDG.pdb ): A versus C
Chains(6ZDG_africa_mut.pdb ) A versus C
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
| Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
|---|---|---|---|---|---|---|---|---|
| A6ZDG | 1884 | 4 | 1 | 4 | 0 | 0 | 0 | 9 |
| B6ZDG_africa_mut | 1884 | 7 | 1 | 8 | 0 | 0 | 0 | 16 |
Matches
(Conservatives hydrophobic matches are hidden by default)
| Chains | Residues | Contact types | |||||||
|---|---|---|---|---|---|---|---|---|---|
| A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
| A-C | A-C | S383 | T94 | S383 | T94 | Hydrogen Bonds | Hydrogen Bonds | 0.14 | View |
| A-C | A-C | F429 | Y92 | F429 | Y92 | Hydrogen Bonds | Hydrogen Bonds | 0.55 | View |
| A-C | A-C | C379 | L95 | C379 | L95 | Hydrophobic | Hydrophobic | 0.53 | View |
| A-C | A-C | P384 | L95 | P384 | L95 | Hydrophobic | Hydrophobic | 0.57 | View |
| A-C | A-C | P384 | L95 | P384 | L95 | Hydrophobic | Hydrophobic | 0.39 | View |
| A-C | A-C | G381 | Y92 | G381 | Y92 | Hydrogen Bonds | Hydrogen Bonds | 0.24 | View |
| A-C | A-C | F429 | Y92 | F429 | Y92 | Hydrogen Bonds | Hydrogen Bonds | 0.33 | View |
| A-C | A-C | K378 | D1 | K378 | D1 | Attractive | Attractive | 0.59 | View |
| A-C | A-C | Y380 | Y92 | Y380 | Y92 | Hydrophobic | Hydrophobic | 0.2 | View |