VTR

12 main matches found (15 matches in total )

Execution time: 9.0 seconds

Match RMSD = 1.16

VTR = 0.05

Average AVD = 1.03 Å

Parameters

Chains(6XKQ.pdb ): A versus H

Chains(6XKQ_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XKQ 569 3 0 14 0 0 0 17
B6XKQ_africa_mut 569 3 0 14 0 0 0 17

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H N487 D96 N487 D96 Hydrogen Bonds Hydrogen Bonds 1.38 View
A-H A-H N487 N97 N487 N97 Hydrogen Bonds Hydrogen Bonds 1.48 View
A-H A-H T478 D96 T478 D96 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-H A-H A475 Y98 A475 Y98 Hydrogen Bonds Hydrogen Bonds 0.99 View
A-H A-H S477 N31 S477 N31 Hydrogen Bonds Hydrogen Bonds 0.75 View
A-H A-H F486 D101 F486 D101 Hydrophobic Hydrophobic 1.9 View
A-H A-H F486 D101 F486 D101 Hydrophobic Hydrophobic 1.87 View
A-H A-H F486 D101 F486 D101 Hydrophobic Hydrophobic 1.73 View
A-H A-H S477 D96 S477 D96 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H Y489 N97 Y489 N97 Hydrogen Bonds Hydrogen Bonds 1.0 View
A-H A-H S477 D96 S477 D96 Hydrogen Bonds Hydrogen Bonds 0.59 View
A-H A-H T478 D96 T478 D96 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-H A-H S477 D96 S477 D96 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-H A-H N487 S95 N487 S95 Hydrogen Bonds Hydrogen Bonds 1.4 View
A-H A-H S477 D96 S477 D96 Hydrogen Bonds Hydrogen Bonds 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XKQ | 6XKQ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XKQ A-H N487 S95 Hydrogen Bonds 3.62 View
6XKQ A-H Y489 F100 Hydrogen Bonds 3.47 View
6XKQ_africa_mut A-H G476 N97 Hydrogen Bonds 3.49 View
6XKQ_africa_mut A-H N487 S95 Hydrogen Bonds 3.49 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph