VTR

10 main matches found (11 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.6

VTR = 0.02

Average AVD = 0.55 Å

Parameters

Chains(6XKP.pdb ): B versus H

Chains(6XKP_africa_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XKP 1213 1 0 4 0 6 0 11
B6XKP_africa_mut 1213 2 0 4 0 8 0 14

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.4 View
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.49 View
B-H B-H R466 Q81 R466 Q81 Hydrogen Bonds Hydrogen Bonds 1.17 View
B-H B-H A520 N204 A520 N204 Hydrophobic Hydrophobic 0.4 View
B-H B-H K462 P14 K462 P14 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.67 View
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.47 View
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.51 View
B-H B-H R357 R19 R357 R19 Repulsive Repulsive 0.58 View
B-H B-H S469 G65 S469 G65 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-H B-H R466 S17 R466 S17 Hydrogen Bonds Hydrogen Bonds 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XKP | 6XKP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XKP_africa_mut B-H R357 R19 Repulsive 5.91 View
6XKP_africa_mut B-H R357 R19 Repulsive 5.33 View
6XKP_africa_mut B-H L518 N204 Hydrophobic 3.74 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph