VTR

5 main matches found (7 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.58

VTR = 0.05

Average AVD = 0.56 Å

Parameters

Chains(6XE1.pdb ): E versus L

Chains(6XE1_africa_mut.pdb ) E versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XE1 630 2 0 5 0 0 0 7
B6XE1_africa_mut 630 5 0 7 0 0 1 13

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-E L-E G92 R403 G92 R403 Hydrogen Bonds Hydrogen Bonds 0.63 View
L-E L-E G92 R403 G92 R403 Hydrogen Bonds Hydrogen Bonds 0.76 View
L-E L-E Y32 R403 Y32 R403 Hydrogen Bonds Hydrogen Bonds 0.34 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.64 View
L-E L-E Y32 Y453 Y32 Y453 Hydrogen Bonds Hydrogen Bonds 0.48 View
L-E L-E Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.64 View
L-E L-E S93 Y505 S93 Y505 Hydrogen Bonds Hydrogen Bonds 0.45 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XE1 | 6XE1_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XE1_africa_mut L-E Q27 Y501 Hydrogen Bonds 3.40 View
6XE1_africa_mut L-E Y32 Y505 Aromatic Stacking 5.40 View
6XE1_africa_mut L-E Y32 Y505 Hydrophobic 4.27 View
6XE1_africa_mut L-E Y32 Y505 Hydrophobic 4.22 View
6XE1_africa_mut L-E Y32 Y505 Hydrophobic 3.92 View
6XE1_africa_mut L-E S93 Y505 Hydrogen Bonds 3.75 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph