VTR

9 main matches found (18 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.38

VTR = 0.01

Average AVD = 0.33 Å

Parameters

Chains(6XDG.pdb ): E versus C

Chains(6XDG_africa_mut.pdb ) E versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XDG 1043 9 1 8 0 0 0 18
B6XDG_africa_mut 1043 11 1 10 0 0 0 22

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-C E-C V445 Y59 V445 Y59 Hydrophobic Hydrophobic 0.25 View
E-C E-C K444 Y53 K444 Y53 Hydrophobic Hydrophobic 0.25 View
E-C E-C V445 V50 V445 V50 Hydrophobic Hydrophobic 0.23 View
E-C E-C V445 S52 V445 S52 Hydrogen Bonds Hydrogen Bonds 0.14 View
E-C E-C V445 V50 V445 V50 Hydrophobic Hydrophobic 0.16 View
E-C E-C N440 G103 N440 G103 Hydrogen Bonds Hydrogen Bonds 0.77 View
E-C E-C K444 Y53 K444 Y53 Hydrophobic Hydrophobic 0.19 View
E-C E-C G446 Y59 G446 Y59 Hydrogen Bonds Hydrogen Bonds 0.25 View
E-C E-C G446 N57 G446 N57 Hydrogen Bonds Hydrogen Bonds 0.4 View
E-C E-C K444 Y53 K444 Y53 Hydrophobic Hydrophobic 0.26 View
E-C E-C K444 N31 K444 N31 Hydrogen Bonds Hydrogen Bonds 0.61 View
E-C E-C V445 Y59 V445 Y59 Hydrophobic Hydrophobic 0.26 View
E-C E-C Y449 N57 Y449 N57 Hydrogen Bonds Hydrogen Bonds 0.53 View
E-C E-C K444 Y53 K444 Y53 Hydrophobic Hydrophobic 0.27 View
E-C E-C K444 D101 K444 D101 Attractive Attractive 0.7 View
E-C E-C Q498 Y59 Q498 Y59 Hydrogen Bonds Hydrogen Bonds 0.2 View
E-C E-C V445 A33 V445 A33 Hydrophobic Hydrophobic 0.11 View
E-C E-C N448 Y53 N448 Y53 Hydrogen Bonds Hydrogen Bonds 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XDG | 6XDG_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XDG_africa_mut E-C L441 Y102 Hydrophobic 4.25 View
6XDG_africa_mut E-C K444 Y53 Hydrophobic 4.43 View
6XDG_africa_mut E-C Y449 Y53 Hydrogen Bonds 3.83 View
6XDG_africa_mut E-C Y449 N57 Hydrogen Bonds 3.87 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph