VTR

16 main matches found (29 matches in total )

Execution time: 22.0 seconds

Match RMSD = 0.8

VTR = 0.03

Average AVD = 0.7 Å

Parameters

Chains(6XCN.pdb ): C versus H

Chains(6XCN_africa_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCN 3603 15 1 15 0 0 1 32
B6XCN_africa_mut 3600 20 0 15 0 0 1 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.37 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.31 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.37 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.52 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.55 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.46 View
C-H C-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.52 View
C-H C-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.44 View
C-H C-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.45 View
C-H C-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.69 View
C-H C-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.79 View
C-H C-H F486 Y102 F486 Y102 Hydrophobic Hydrophobic 1.39 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.1 View
C-H C-H N487 F27 N487 F27 Hydrophobic Hydrophobic 0.4 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 1.02 View
C-H C-H K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-H C-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.56 View
C-H C-H K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.58 View
C-H C-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.55 View
C-H C-H Y421 Y33 Y421 Y33 Hydrogen Bonds Hydrogen Bonds 0.44 View
C-H C-H R457 Y33 R457 Y33 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-H C-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-H C-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.55 View
C-H C-H Y473 N32 Y473 N32 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-H C-H Y453 E99 Y453 E99 Hydrogen Bonds Hydrogen Bonds 1.5 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.84 View
C-H C-H F456 L100 F456 L100 Hydrophobic Hydrophobic 0.93 View
C-H C-H F486 Y102 F486 Y102 Hydrophobic 1.83 View
C-H C-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.57 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCN | 6XCN_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCN C-H K417 Y52 Hydrophobic 4.19 View
6XCN C-H K417 Y52 Hydrogen Bonds 3.72 View
6XCN C-H K417 E96 Attractive 5.31 View
6XCN_africa_mut C-H F456 Y33 Hydrophobic 4.42 View
6XCN_africa_mut C-H F456 Y33 Hydrophobic 4.35 View
6XCN_africa_mut C-H F456 Y33 Hydrophobic 4.15 View
6XCN_africa_mut C-H F456 Y33 Hydrophobic 4.01 View
6XCN_africa_mut C-H F456 L100 Hydrophobic 3.93 View
6XCN_africa_mut C-H K458 S53 Hydrogen Bonds 3.79 View
6XCN_africa_mut C-H F486 Y102 Hydrophobic 4.45 View
6XCN_africa_mut C-H F486 Y102 Hydrophobic 3.74 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph