VTR

8 main matches found (26 matches in total )

Execution time: 15.0 seconds

Match RMSD = 0.73

VTR = 0.04

Average AVD = 0.69 Å

Parameters

Chains(6XCM.pdb ): B versus S

Chains(6XCM_africa_mut.pdb ) B versus S

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XCM 3368 20 0 6 0 0 3 29
B6XCM_africa_mut 3365 24 0 8 0 0 3 35

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.51 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.59 View
B-S B-S R403 G93 R403 G93 Hydrogen Bonds Hydrogen Bonds 1.63 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.89 View
B-S B-S Y505 Y91 Y505 Y91 Hydrophobic Hydrophobic 0.71 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.5 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.67 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.52 View
B-S B-S Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.48 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.74 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.53 View
B-S B-S G502 G29 G502 G29 Hydrogen Bonds Hydrogen Bonds 0.91 View
B-S B-S Y505 Y91 Y505 Y91 Hydrophobic Hydrophobic 0.69 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.53 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.86 View
B-S B-S R403 Y91 R403 Y91 Hydrogen Bonds Hydrogen Bonds 0.74 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.45 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.83 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.54 View
B-S B-S Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.46 View
B-S B-S Y505 Y30 Y505 Y30 Aromatic Stacking Aromatic Stacking 0.5 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.84 View
B-S B-S Y505 Y30 Y505 Y30 Hydrophobic Hydrophobic 0.55 View
B-S B-S D405 Y30 D405 Y30 Hydrogen Bonds Hydrogen Bonds 0.93 View
B-S B-S Y505 Y91 Y505 Y91 Aromatic Stacking Aromatic Stacking 0.53 View
B-S B-S Q498 K31 Q498 K31 Hydrogen Bonds Hydrogen Bonds 0.72 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XCM | 6XCM_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XCM B-S N501 G29 Hydrogen Bonds 3.54 View
6XCM B-S N501 K31 Hydrophobic 4.22 View
6XCM B-S N501 K31 Hydrophobic 3.94 View
6XCM_africa_mut B-S R403 G93 Hydrogen Bonds 3.71 View
6XCM_africa_mut B-S D405 Y30 Hydrogen Bonds 3.76 View
6XCM_africa_mut B-S Y505 Y30 Hydrophobic 3.82 View
6XCM_africa_mut B-S Y505 Y30 Hydrophobic 3.04 View
6XCM_africa_mut B-S Y505 Y32 Hydrophobic 4.47 View
6XCM_africa_mut B-S Y505 Y32 Hydrophobic 4.43 View
6XCM_africa_mut B-S Y505 Y32 Hydrophobic 4.01 View
6XCM_africa_mut B-S Y505 Y32 Hydrophobic 3.48 View
6XCM_africa_mut B-S Y505 Y91 Hydrogen Bonds 3.52 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph