VTR

12 main matches found (40 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.63

VTR = 0.02

Average AVD = 0.54 Å

Parameters

Chains(6XC7.pdb ): A versus H

Chains(6XC7_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC7 1049 28 6 10 0 0 0 44
B6XC7_africa_mut 1049 34 7 12 0 0 0 53

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y380 I98 Y380 I98 Hydrophobic Hydrophobic 0.97 View
A-H A-H F377 I30 F377 I30 Hydrophobic Hydrophobic 0.21 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.45 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.38 View
A-H A-H K378 D54 K378 D54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.28 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.24 View
A-H A-H K378 E56 K378 E56 Attractive Attractive 0.75 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.34 View
A-H A-H P384 T31 P384 T31 Hydrophobic Hydrophobic 0.18 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.27 View
A-H A-H F377 Y52 F377 Y52 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-H A-H C379 I98 C379 I98 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H F377 I30 F377 I30 Hydrophobic Hydrophobic 0.18 View
A-H A-H K378 D54 K378 D54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.0 View
A-H A-H Y380 I98 Y380 I98 Hydrophobic Hydrophobic 1.02 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.43 View
A-H A-H F377 I30 F377 I30 Hydrophobic Hydrophobic 0.23 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.63 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.59 View
A-H A-H K378 E56 K378 E56 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.72 View
A-H A-H F377 Y52 F377 Y52 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-H A-H F377 I30 F377 I30 Hydrophobic Hydrophobic 0.28 View
A-H A-H K378 W33 K378 W33 Hydrophobic Hydrophobic 0.35 View
A-H A-H K386 D101 K386 D101 Attractive Attractive Hydrogen Bonds 1.07 View
A-H A-H K386 D101 K386 D101 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.0 View
A-H A-H Y369 G28 Y369 G28 Hydrogen Bonds Hydrogen Bonds 0.56 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.81 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.85 View
A-H A-H Y380 I98 Y380 I98 Hydrophobic Hydrophobic 0.89 View
A-H A-H Y380 I98 Y380 I98 Hydrophobic Hydrophobic 0.93 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.21 View
A-H A-H F377 I30 F377 I30 Hydrophobic Hydrophobic 0.45 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.62 View
A-H A-H K378 W33 K378 W33 Hydrophobic Hydrophobic 0.39 View
A-H A-H G381 I98 G381 I98 Hydrogen Bonds Hydrogen Bonds 1.11 View
A-H A-H Y369 T31 Y369 T31 Hydrophobic Hydrophobic 0.14 View
A-H A-H K378 Y52 K378 Y52 Hydrophobic Hydrophobic 0.41 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.13 View
A-H A-H F377 T31 F377 T31 Hydrophobic Hydrophobic 0.35 View
A-H A-H K378 Y52 K378 Y52 Hydrogen Bonds Hydrogen Bonds 0.25 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC7 | 6XC7_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC7_africa_mut A-H K378 W33 Hydrophobic 4.09 View
6XC7_africa_mut A-H K378 W33 Hydrophobic 4.32 View
6XC7_africa_mut A-H K378 Y52 Hydrophobic 4.39 View
6XC7_africa_mut A-H K378 Y52 Hydrophobic 4.03 View
6XC7_africa_mut A-H K378 Y52 Hydrophobic 4.18 View
6XC7_africa_mut A-H C379 W33 Hydrogen Bonds 3.81 View
6XC7_africa_mut A-H Y380 W33 Hydrophobic 4.44 View
6XC7_africa_mut A-H R408 D54 Attractive 5.56 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph