VTR

22 main matches found (52 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.44

VTR = 0.01

Average AVD = 0.39 Å

Parameters

Chains(6XC4.pdb ): A versus H

Chains(6XC4_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC4 1245 30 2 20 0 0 3 55
B6XC4_africa_mut 1245 38 0 21 0 0 3 62

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-H A-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.7 View
A-H A-H L455 F99 L455 F99 Hydrophobic Hydrophobic 0.67 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.19 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.45 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.43 View
A-H A-H K417 Y52 N417 Y52 Hydrophobic Hydrophobic 1.02 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.38 View
A-H A-H L455 F99 L455 F99 Hydrophobic Hydrophobic 0.49 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.3 View
A-H A-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.3 View
A-H A-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.46 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.21 View
A-H A-H F486 Y102 F486 Y102 Hydrophobic Hydrophobic 0.59 View
A-H A-H L455 F99 L455 F99 Hydrophobic Hydrophobic 0.43 View
A-H A-H L455 F99 L455 F99 Hydrophobic Hydrophobic 0.74 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.21 View
A-H A-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-H A-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.28 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.33 View
A-H A-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.41 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.42 View
A-H A-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.23 View
A-H A-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-H A-H S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-H A-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-H A-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.56 View
A-H A-H R457 G54 R457 G54 Hydrogen Bonds Hydrogen Bonds 0.23 View
A-H A-H Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H Y489 F96 Y489 F96 Hydrophobic Hydrophobic 0.34 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.19 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.23 View
A-H A-H F456 F96 F456 F96 Aromatic Stacking Aromatic Stacking 0.22 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.17 View
A-H A-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-H A-H L455 F96 L455 F96 Hydrophobic Hydrophobic 0.45 View
A-H A-H Y489 F96 Y489 F96 Aromatic Stacking Aromatic Stacking 0.22 View
A-H A-H Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.32 View
A-H A-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.3 View
A-H A-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-H A-H N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-H A-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.32 View
A-H A-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-H A-H K417 Y52 N417 Y52 Hydrophobic Hydrophobic 1.1 View
A-H A-H F456 F96 F456 F96 Hydrophobic Hydrophobic 0.26 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC4 | 6XC4_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC4 A-H K417 G97 Hydrogen Bonds 2.91 View
6XC4 A-H K417 D98 Attractive 5.78 View
6XC4 A-H K417 D98 Attractive 4.53 View
6XC4_africa_mut A-H N417 Y33 Hydrogen Bonds 3.32 View
6XC4_africa_mut A-H L455 F96 Hydrophobic 4.35 View
6XC4_africa_mut A-H F456 Y33 Hydrophobic 4.37 View
6XC4_africa_mut A-H F456 F96 Hydrophobic 4.43 View
6XC4_africa_mut A-H K458 G54 Hydrogen Bonds 3.88 View
6XC4_africa_mut A-H Y489 F96 Hydrophobic 4.47 View
6XC4_africa_mut A-H Y489 F96 Hydrophobic 4.48 View
6XC4_africa_mut A-H Y489 F96 Hydrophobic 4.05 View
6XC4_africa_mut A-H Y489 F96 Hydrophobic 4.05 View
6XC4_africa_mut A-H Y489 F96 Hydrophobic 4.40 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph