VTR

18 main matches found (43 matches in total )

Execution time: 15.0 seconds

Match RMSD = 0.48

VTR = 0.01

Average AVD = 0.45 Å

Parameters

Chains(6XC3.pdb ): C versus B

Chains(6XC3_africa_mut.pdb ) C versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC3 1047 26 2 19 0 0 0 47
B6XC3_africa_mut 1047 27 0 23 0 0 1 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-C B-C L96 Y489 L96 Y489 Hydrophobic Hydrophobic 0.68 View
B-C B-C R94 N487 R94 N487 Hydrogen Bonds Hydrogen Bonds 0.18 View
B-C B-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.33 View
B-C B-C V98 Q493 V98 Q493 Hydrophobic Hydrophobic 0.43 View
B-C B-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.3 View
B-C B-C Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-C B-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.53 View
B-C B-C R94 N487 R94 N487 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-C B-C Y52 K417 Y52 N417 Hydrophobic Hydrophobic 1.06 View
B-C B-C Y33 Y421 Y33 Y421 Hydrophobic Hydrophobic 0.65 View
B-C B-C S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-C B-C G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-C B-C V98 Q493 V98 Q493 Hydrophobic Hydrophobic 0.51 View
B-C B-C Y99 Q493 Y99 Q493 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-C B-C D97 L455 D97 L455 Hydrophobic Hydrophobic 0.24 View
B-C B-C D97 L455 D97 L455 Hydrophobic Hydrophobic 0.44 View
B-C B-C Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.34 View
B-C B-C T28 G476 T28 G476 Hydrogen Bonds Hydrogen Bonds 0.56 View
B-C B-C G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C L96 Y489 L96 Y489 Hydrophobic Hydrophobic 0.5 View
B-C B-C V102 F486 V102 F486 Hydrophobic Hydrophobic 0.42 View
B-C B-C G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.51 View
B-C B-C R94 Y489 R94 Y489 Hydrogen Bonds Hydrogen Bonds 0.21 View
B-C B-C S53 R457 S53 R457 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-C B-C T28 A475 T28 A475 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-C B-C L96 F456 L96 F456 Hydrophobic Hydrophobic 0.55 View
B-C B-C S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.53 View
B-C B-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.34 View
B-C B-C V98 L455 V98 L455 Hydrophobic Hydrophobic 0.57 View
B-C B-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.38 View
B-C B-C D97 Y453 D97 Y453 Hydrogen Bonds Hydrogen Bonds 0.65 View
B-C B-C D97 L455 D97 L455 Hydrophobic Hydrophobic 0.29 View
B-C B-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.48 View
B-C B-C S31 Y473 S31 Y473 Hydrogen Bonds Hydrogen Bonds 0.46 View
B-C B-C V2 F486 V2 F486 Hydrophobic Hydrophobic 0.37 View
B-C B-C S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-C B-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.35 View
B-C B-C Y99 F456 Y99 F456 Hydrophobic Hydrophobic 0.4 View
B-C B-C N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-C B-C Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.35 View
B-C B-C L96 Y489 L96 Y489 Hydrophobic Hydrophobic 0.49 View
B-C B-C L96 F456 L96 F456 Hydrophobic Hydrophobic 0.57 View
B-C B-C Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.73 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC3 | 6XC3_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC3 B-C Y33 K417 Hydrophobic 4.47 View
6XC3 B-C D97 K417 Attractive, Hydrogen Bonds 3.25 View
6XC3 B-C D97 K417 Attractive 4.59 View
6XC3_africa_mut B-C T28 A475 Hydrogen Bonds 3.65 View
6XC3_africa_mut B-C S31 Y473 Hydrogen Bonds 3.84 View
6XC3_africa_mut B-C Y33 N417 Hydrogen Bonds 2.76 View
6XC3_africa_mut B-C Y52 Y421 Hydrophobic 4.20 View
6XC3_africa_mut B-C S53 K458 Hydrogen Bonds 3.30 View
6XC3_africa_mut B-C L96 Y489 Hydrophobic 4.35 View
6XC3_africa_mut B-C Y99 K484 Hydrogen Bonds 3.54 View
6XC3_africa_mut B-C Y99 Y489 Aromatic Stacking 5.92 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph