VTR

27 main matches found (59 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.57

VTR = 0.02

Average AVD = 0.53 Å

Parameters

Chains(6XC2.pdb ): Z versus X

Chains(6XC2_africa_mut.pdb ) Z versus X

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC2 1240 32 4 28 0 0 2 66
B6XC2_africa_mut 1240 37 0 28 0 0 3 68

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
Z-X Z-X Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.54 View
Z-X Z-X L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.41 View
Z-X Z-X Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.76 View
Z-X Z-X G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.65 View
Z-X Z-X F486 V103 F486 V103 Hydrophobic Hydrophobic 0.54 View
Z-X Z-X K417 Y52 N417 Y52 Hydrophobic Hydrophobic 1.53 View
Z-X Z-X N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.38 View
Z-X Z-X D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.43 View
Z-X Z-X F456 Y99 F456 Y99 Hydrophobic Hydrophobic 0.74 View
Z-X Z-X K417 Y33 N417 Y33 Hydrophobic Hydrophobic 1.32 View
Z-X Z-X Y489 Y99 Y489 Y99 Aromatic Stacking Aromatic Stacking 0.45 View
Z-X Z-X Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.31 View
Z-X Z-X F486 V2 F486 V2 Hydrophobic Hydrophobic 0.48 View
Z-X Z-X K417 Y52 N417 Y52 Hydrogen Bonds Hydrogen Bonds 0.38 View
Z-X Z-X N460 S56 N460 S56 Hydrogen Bonds Hydrogen Bonds 0.45 View
Z-X Z-X F456 L96 F456 L96 Hydrophobic Hydrophobic 0.38 View
Z-X Z-X Y421 Y33 Y421 Y33 Hydrophobic Hydrophobic 0.6 View
Z-X Z-X Q474 S31 Q474 S31 Hydrogen Bonds Hydrogen Bonds 0.29 View
Z-X Z-X A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.35 View
Z-X Z-X F456 Y99 F456 Y99 Hydrophobic Hydrophobic 0.72 View
Z-X Z-X Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.26 View
Z-X Z-X Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.29 View
Z-X Z-X Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.48 View
Z-X Z-X Q493 Y99 Q493 Y99 Hydrogen Bonds Hydrogen Bonds 0.56 View
Z-X Z-X F456 Y99 F456 Y99 Hydrophobic Hydrophobic 0.73 View
Z-X Z-X Y453 D97 Y453 D97 Hydrogen Bonds Hydrogen Bonds 0.48 View
Z-X Z-X A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.42 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.71 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.8 View
Z-X Z-X Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.3 View
Z-X Z-X Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.36 View
Z-X Z-X F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.38 View
Z-X Z-X L455 D97 L455 D97 Hydrophobic Hydrophobic 0.48 View
Z-X Z-X Y489 D102 Y489 D102 Hydrogen Bonds Hydrogen Bonds 0.47 View
Z-X Z-X Y473 S53 Y473 S53 Hydrogen Bonds Hydrogen Bonds 0.34 View
Z-X Z-X N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.66 View
Z-X Z-X F456 Y99 F456 Y99 Hydrophobic Hydrophobic 0.73 View
Z-X Z-X F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.3 View
Z-X Z-X A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.55 View
Z-X Z-X Y421 Y52 Y421 Y52 Aromatic Stacking Aromatic Stacking 0.24 View
Z-X Z-X F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.34 View
Z-X Z-X F456 L96 F456 L96 Hydrophobic Hydrophobic 0.36 View
Z-X Z-X Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.55 View
Z-X Z-X F486 V103 F486 V103 Hydrophobic Hydrophobic 0.62 View
Z-X Z-X Y489 L96 Y489 L96 Hydrophobic Hydrophobic 0.41 View
Z-X Z-X F486 V2 F486 V2 Hydrophobic Hydrophobic 0.53 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.72 View
Z-X Z-X N460 S56 N460 S56 Hydrogen Bonds Hydrogen Bonds 0.42 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.78 View
Z-X Z-X R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.4 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.81 View
Z-X Z-X N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.4 View
Z-X Z-X S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.49 View
Z-X Z-X L455 D97 L455 D97 Hydrophobic Hydrophobic 0.43 View
Z-X Z-X F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.34 View
Z-X Z-X Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 0.73 View
Z-X Z-X D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.51 View
Z-X Z-X F486 V2 F486 V2 Hydrophobic Hydrophobic 0.49 View
Z-X Z-X S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.5 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC2 | 6XC2_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC2 Z-X K417 Y52 Hydrogen Bonds 3.26 View
6XC2 Z-X K417 D95 Attractive 5.89 View
6XC2 Z-X K417 D95 Attractive 4.14 View
6XC2 Z-X K417 D97 Attractive, Hydrogen Bonds 2.46 View
6XC2 Z-X K417 D97 Attractive, Hydrogen Bonds 3.16 View
6XC2_africa_mut Z-X N417 Y33 Hydrogen Bonds 2.49 View
6XC2_africa_mut Z-X Y421 Y52 Hydrophobic 4.39 View
6XC2_africa_mut Z-X Y421 Y52 Hydrophobic 4.45 View
6XC2_africa_mut Z-X Y421 Y52 Hydrophobic 4.02 View
6XC2_africa_mut Z-X L455 Y99 Hydrophobic 4.10 View
6XC2_africa_mut Z-X F456 Y33 Aromatic Stacking 5.95 View
6XC2_africa_mut Z-X A475 S31 Hydrogen Bonds 3.69 View
6XC2_africa_mut Z-X K484 Y99 Hydrogen Bonds 2.75 View
6XC2_africa_mut Z-X Y489 Y99 Hydrophobic 4.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph