VTR

19 main matches found (33 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.48

VTR = 0.02

Average AVD = 0.38 Å

Parameters

Chains(6XC2.pdb ): A versus L

Chains(6XC2_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6XC2 1240 14 0 20 0 1 1 36
B6XC2_africa_mut 1240 17 0 21 0 0 1 39

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L T500 G28 T500 G28 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.13 View
A-L A-L G496 S30 G496 S30 Hydrogen Bonds Hydrogen Bonds 0.59 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.14 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.12 View
A-L A-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-L A-L R403 N92 R403 N92 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-L A-L Y505 L91 Y505 L91 Hydrogen Bonds Hydrogen Bonds 0.21 View
A-L A-L R408 Y94 R408 Y94 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-L A-L Y505 I2 Y505 I2 Hydrophobic Hydrophobic 0.39 View
A-L A-L S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-L A-L R408 Y94 R408 Y94 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-L A-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.44 View
A-L A-L Q498 S67 Q498 S67 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.13 View
A-L A-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.29 View
A-L A-L Y505 Q90 Y505 Q90 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-L A-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.38 View
A-L A-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.51 View
A-L A-L Y505 N92 Y505 N92 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-L A-L Q498 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-L A-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.18 View
A-L A-L Y453 N92 Y453 N92 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.16 View
A-L A-L Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.17 View
A-L A-L Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.5 View
A-L A-L Q498 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 0.48 View
A-L A-L N501 S30 Q498 S30 Hydrogen Bonds Hydrogen Bonds 1.65 View
A-L A-L G502 G28 G502 G28 Hydrogen Bonds Hydrogen Bonds 0.83 View
A-L A-L D405 Y94 D405 Y94 Hydrophobic Hydrophobic 0.48 View
A-L A-L G496 Y32 G496 Y32 Hydrogen Bonds Hydrogen Bonds 0.14 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.15 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6XC2 | 6XC2_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6XC2 A-L K417 K97 Repulsive 5.51 View
6XC2 A-L N501 S30 Hydrogen Bonds 3.08 View
6XC2 A-L N501 S30 Hydrogen Bonds 2.12 View
6XC2_africa_mut A-L R408 Y94 Hydrophobic 4.32 View
6XC2_africa_mut A-L Y501 Q27 Hydrophobic 4.45 View
6XC2_africa_mut A-L Y501 Q27 Hydrogen Bonds 2.78 View
6XC2_africa_mut A-L Y501 Q27 Hydrogen Bonds 3.07 View
6XC2_africa_mut A-L Y501 G28 Hydrogen Bonds 3.34 View
6XC2_africa_mut A-L Y505 N92 Hydrophobic 4.48 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph