VTR

12 main matches found (27 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.82

VTR = 0.02

Average AVD = 0.74 Å

Parameters

Chains(6W41.pdb ): C versus H

Chains(6W41_africa_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6W41 626 15 6 12 0 0 0 33
B6W41_africa_mut 626 21 6 12 0 0 0 39

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-C H-C W33 K378 W33 K378 Hydrophobic Hydrophobic 0.37 View
H-C H-C T100 V382 T100 V382 Hydrogen Bonds Hydrogen Bonds 1.12 View
H-C H-C I30 F377 I30 F377 Hydrophobic Hydrophobic 0.44 View
H-C H-C Y52 K378 Y52 K378 Hydrogen Bonds Hydrogen Bonds 0.56 View
H-C H-C W33 K378 W33 K378 Hydrophobic Hydrophobic 0.39 View
H-C H-C T31 P384 T31 P384 Hydrophobic Hydrophobic 0.48 View
H-C H-C E56 K378 E56 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.41 View
H-C H-C Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.68 View
H-C H-C D54 K378 D54 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.58 View
H-C H-C E56 K378 E56 K378 Attractive Attractive 0.37 View
H-C H-C I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.2 View
H-C H-C Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.28 View
H-C H-C I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.2 View
H-C H-C Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.35 View
H-C H-C Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.54 View
H-C H-C T100 S383 S99 S383 Hydrogen Bonds Hydrogen Bonds 1.13 View
H-C H-C D54 K378 D54 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.84 View
H-C H-C Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.59 View
H-C H-C I98 C379 I98 C379 Hydrogen Bonds Hydrogen Bonds 0.91 View
H-C H-C Y52 K378 Y52 K378 Hydrophobic Hydrophobic 0.67 View
H-C H-C S99 Y380 S99 Y380 Hydrogen Bonds Hydrogen Bonds 1.41 View
H-C H-C I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.06 View
H-C H-C Y52 F377 Y52 F377 Hydrogen Bonds Hydrogen Bonds 0.61 View
H-C H-C I30 F377 I30 F377 Hydrophobic Hydrophobic 0.26 View
H-C H-C I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.31 View
H-C H-C D101 K386 D101 K386 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.8 View
H-C H-C I98 Y380 I98 Y380 Hydrophobic Hydrophobic 1.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6W41 | 6W41_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6W41 H-C D101 K386 Attractive, Hydrogen Bonds 3.57 View
6W41_africa_mut H-C W33 K378 Hydrophobic 4.37 View
6W41_africa_mut H-C W33 Y380 Hydrophobic 4.47 View
6W41_africa_mut H-C Y52 T376 Hydrophobic 3.73 View
6W41_africa_mut H-C Y52 K378 Hydrophobic 4.40 View
6W41_africa_mut H-C Y52 K378 Hydrophobic 3.96 View
6W41_africa_mut H-C I98 Y380 Hydrophobic 4.46 View
6W41_africa_mut H-C D101 K386 Attractive, Hydrogen Bonds 4.31 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph