4GYO-C-B

PDB UniProt PubMed Cluster S715 Cluster C449 Cluster I437

PDB Title	CRYSTAL STRUCTURE OF RAP PROTEIN COMPLEXED WITH COMPETENCE AND SPORULATION FACTOR
Resolution (Å)	2.160
Classification	HYDROLASE

Peptide

Description	CSF peptide
Organism	Bacillus subtilis
Chain	C
Length	5
Binding Area (Å²)	826.88
Hydrophobic (% a.a.)	40%
Molecular Weight	592.67
Aromaticity	0.00
Instability	-14.74
Isoelectric Point	6.10
Sequence	ERGMT

Protein

Description	Response regulator aspartate phosphatase J
Organism	Bacillus subtilis
Chain	B
Length	360
Binding Area (Å²)	482.51
Molecular Weight	-
Aromaticity	0.15
Instability	-
Isoelectric Point	5.02
Sequence	SEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKPFSDMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMNYASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALEHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAEGYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTECFDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRX

Clustering Classification

Sequence cluster	S 715
Contact cluster	C449
Interface cluster	I437

Similar complexes

Is the complex classified in the same cluster?

Complex	Sequence cluster (S715)	Contact cluster (C449)	Interface cluster (I437)
4gyo-D-A

Please, cite:

Pedro M. Martins, Lucianna H. Santos, Diego Mariano, Felippe C. Queiroz, Luana L. Bastos, Isabela de S. Gomes, Pedro H. C. Fischer, Rafael E. O. Rocha, Sabrina A. Silveira, Leonardo H. F. de Lima, Mariana T. Q. de Magalhães, Maria G. A. Oliveira & Raquel C. de Melo-Minardi (2021). Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. Bioinformatics, 22(1), 1-20.

Designed by:
Dr Pedro Martins
Dr Lucianna H. Santos
Dr Diego Mariano
Prof. Dr Raquel de Melo-Minardi

Back-end:
Dr Pedro Martins

Front-end:
Dr Pedro Martins / Dr Diego Mariano
Business vector created by freepik - www.freepik.com

Financing and support:
CAPES / UFMG / LBS

Propedia v2.3

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Protein-peptide complexes updated
Clustering method based on structural signatures included
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