5BWD-C-A

PDB UniProt PubMed Cluster S303 Cluster C466 Cluster I1331

PDB Title	BENZYLSUCCINATE ALPHA-GAMMA BOUND TO FUMARATE
Resolution (Å)	2.000
Classification	LYASE

Peptide

Description	benzylsuccinate synthase gamma chain
Organism	Thauera aromatica
Chain	C
Length	39
Binding Area (Å²)	1124.91
Hydrophobic (% a.a.)	41%
Molecular Weight	4511.01
Aromaticity	0.15
Instability	9.46
Isoelectric Point	4.81
Sequence	CANFFPVPKDADDYEAGKADCVREKEDEKGKYWLSKPIF

Protein

Description	benzylsuccinate synthase alpha chain
Organism	Thauera aromatica
Chain	A
Length	861
Binding Area (Å²)	1053.06
Molecular Weight	-
Aromaticity	0.09
Instability	-
Isoelectric Point	5.95
Sequence	VSAKVLEYKGKKLNFTPEDPAEETIPADELHEHLQKPSTARTKRLKERCRWKHASAGEFIEKSVTAGIERMRYLTEAHKASEGKPEAIRRALGLANVLNKSTLVLQEDEFIVGYHAEDPNMFPLYPELSHMAVQDYLRSDYSPQPADEAAAINEYWKPHSLQSKCQPYFDPADLGRMYQVSSMEAPSFASGYNSIVPPYETVLEDGLLARIKLAEKHIAEAQADMSTFPWNGTKGLDNIAKIDNWKAMVIACKAVISWARRQGRLCKIVAENFETDPKRQAELLEIADICQRIPAEPCKGLKDAMQAKFFTFLICHAIERYASGYAQKEDTLLWPYYKASVVDKKFQPMSHMDAVELVEMERLKISEHGAGKSRAYREIFPGSNDLFILTVGGTNAKGEDACNDMTDAILEAAKRIRTAEPSIVFRYSKKNREKTLRWVFECIRDGLGYPSIKHDEIGTEQMKEYAKFSLNGNGATDEEAHNWVNVLCMSPGIHGRRKTQKTRSEGGGSIFPAKLLEISLNDGYDWSYADMQLGPKTGDLSSLKSFEDVWEAFRKQYQYAINLCISTKDVSRYFEQRFLQMPFVSAIDDGCMELGMDACALSEQPNGWHNPITTIVAANSLVAIKKLVFEEKKYTLEQLSQALKANWEGFEEMRVDFKRAPKWGNDDDYADGIITRFYEEIIGGEMRKITNYSGGPVMPTGQAGSRTGPTPDGRFGGEAADDGGISPYMGTDKKGPTAVLRSVSKVQKNQKGNLLNQRLSVPIMRSKHGFEIWNSYIKTWHDLNIDHVQFNVVSTDEMRAAQREPEKHHDLIVRVSGYSARFVDIPTYGQNTIIARQEQDFSASDLEFLNVEIXXXXXXXX

Clustering Classification

Sequence cluster	S 303
Contact cluster	C466
Interface cluster	I1331

Similar complexes

Is the complex classified in the same cluster?

Complex	Sequence cluster (S303)	Contact cluster (C466)	Interface cluster (I1331)
4pkf-C-A

Please, cite:

Pedro M. Martins, Lucianna H. Santos, Diego Mariano, Felippe C. Queiroz, Luana L. Bastos, Isabela de S. Gomes, Pedro H. C. Fischer, Rafael E. O. Rocha, Sabrina A. Silveira, Leonardo H. F. de Lima, Mariana T. Q. de Magalhães, Maria G. A. Oliveira & Raquel C. de Melo-Minardi (2021). Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. Bioinformatics, 22(1), 1-20.

Designed by:
Dr Pedro Martins
Dr Lucianna H. Santos
Dr Diego Mariano
Prof. Dr Raquel de Melo-Minardi

Back-end:
Dr Pedro Martins

Front-end:
Dr Pedro Martins / Dr Diego Mariano
Business vector created by freepik - www.freepik.com

Financing and support:
CAPES / UFMG / LBS

Propedia v2.3

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Protein-peptide complexes updated
Clustering method based on structural signatures included
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