PROPEDIA is a database of peptide-protein complexes clusterized in three methodologies: based on peptide sequences; based on structure interface; and based on binding sites. PROPEDIA main goal is to give new insights into peptide design of biotechnological interests.
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PEPTIDE COMPLEXES*
SEQUENCE CLUSTERS
INTERFACE CLUSTERS
BINDING SITE CLUSTERS
Pedro M. Martins, Lucianna H. Santos, Diego Mariano, Felippe C. Queiroz, Luana L. Bastos, Isabela de S. Gomes, Pedro H. C. Fischer, Rafael E. O. Rocha, Sabrina A. Silveira, Leonardo H. F. de Lima, Mariana T. Q. de Magalhães, Maria G. A. Oliveira & Raquel C. de Melo-Minardi (2021). Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. BMC Bioinformatics, 22(1), 1-20.
Propedia is composed of many datasets of protein-peptide complexes. You can explore and construct your queries clicking on "View all" button or browse by the most accessed datasets shown below.