GLUTANTBASE

Medicago truncatula β-glucosidase Download PDB file

Protein: Beta-glucosidase

Organism: Medicago truncatula

Lenght: 493

UniprotID: I3SYX2 (Download sequence)

Template: 3GNO:A (51.99%) | [φ,ψ] plot

Amino acid:

Local position¹:

Global position²:

Conserved > 80%:

Conserved 50-79%:

Secondary structure:

Co-evoluted network:

Mutation predicted:

Co-evolution network³

Residue	Community	Network

¹ Residue Corresponding position in the amino acids sequence.

² We performed multiple alignment between all GH1 beta-glucosidases sequences using Clustal omega (default parameters). We collected the amino acids that appear in more than 50% of the sequences and more than 80% of the sequences.

³ Co-evolution network was generated using PFSTATS and family GH1 sequences obtained from PFAM. Amino acid residues edges represent correlation links between them.

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '1', 
                            '316',
                            'methionine');" 
                            onmouseout="hideAminoAcid('M', 'M1')"  
                            onmouseover="showAminoAcid('M1'); selectID(glviewer,1)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
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                            style=""
                            title="M
Local position: 1
Global position: 316"
                        >
                            M                            
                        					                        						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '2', 
                            '317',
                            'valine');" 
                            onmouseout="hideAminoAcid('V', 'V2')"  
                            onmouseover="showAminoAcid('V2'); selectID(glviewer,2)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
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                            style=""
                            title="V
Local position: 2
Global position: 317"
                        >
                            V                            
                        					                        						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '3', 
                            '318',
                            'lysine');" 
                            onmouseout="hideAminoAcid('K', 'K3')"  
                            onmouseover="showAminoAcid('K3'); selectID(glviewer,3)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="K
Local position: 3
Global position: 318"
                        >
                            K                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'default', '', '4', '319', 'lysine');" onmouseout="hideAminoAcid('K', 'K4')" onmouseover="showAminoAcid('K4'); selectID(glviewer,4)" class="btn btn-default

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="K Local position: 4 Global position: 319" > K

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'danger', 
                            '', 
                            '36', 
                            '433',
                            'threonine');" 
                            onmouseout="hideAminoAcid('T', 'T36')"  
                            onmouseover="showAminoAcid('T36'); selectID(glviewer,36)" 
                            class="btn btn-danger conserved80_active
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			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="T
Local position: 36
Global position: 433"
                        >
                            T                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'info', '', '37', '434', 'serine');" onmouseout="hideAminoAcid('S', 'S37')" onmouseover="showAminoAcid('S37'); selectID(glviewer,37)" class="btn btn-info conserved50_active

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="S Local position: 37 Global position: 434" > S

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'info', 
                            '', 
                            '71', 
                            '530',
                            'glycine');" 
                            onmouseout="hideAminoAcid('G', 'G71')"  
                            onmouseover="showAminoAcid('G71'); selectID(glviewer,71)" 
                            class="btn btn-info conserved50_active
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			File: /scratch/html/glutantbase/application/views/view.php

			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="G
Local position: 71
Global position: 530"
                        >
                            G                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'info', '', '72', '531', 'aspartic acid');" onmouseout="hideAminoAcid('D', 'D72')" onmouseover="showAminoAcid('D72'); selectID(glviewer,72)" class="btn btn-info conserved50_active

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="D Local position: 72 Global position: 531" > D

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '106', 
                            '575',
                            'phenylalanine');" 
                            onmouseout="hideAminoAcid('F', 'F106')"  
                            onmouseover="showAminoAcid('F106'); selectID(glviewer,106)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="F
Local position: 106
Global position: 575"
                        >
                            F                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'danger', ' coevo_1_inactive', '107', '576', 'proline');" onmouseout="hideAminoAcid('P', 'P107')" onmouseover="showAminoAcid('P107'); selectID(glviewer,107)" class="btn btn-danger coevo_1_inactive conserved80_active

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="P Local position: 107 Global position: 576" > P

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'info', 
                            '', 
                            '141', 
                            '654',
                            'tyrosine');" 
                            onmouseout="hideAminoAcid('Y', 'Y141')"  
                            onmouseover="showAminoAcid('Y141'); selectID(glviewer,141)" 
                            class="btn btn-info conserved50_active
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			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="Y
Local position: 141
Global position: 654"
                        >
                            Y                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'danger', '', '142', '655', 'histidine');" onmouseout="hideAminoAcid('H', 'H142')" onmouseover="showAminoAcid('H142'); selectID(glviewer,142)" class="btn btn-danger conserved80_active

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="color: orange; font-weight:bold;" title="H Local position: 142 Global position: 655" > H

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'info', 
                            '', 
                            '176', 
                            '718',
                            'phenylalanine');" 
                            onmouseout="hideAminoAcid('F', 'F176')"  
                            onmouseover="showAminoAcid('F176'); selectID(glviewer,176)" 
                            class="btn btn-info conserved50_active
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			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="F
Local position: 176
Global position: 718"
                        >
                            F                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'info', '', '177', '719', 'glycine');" onmouseout="hideAminoAcid('G', 'G177')" onmouseover="showAminoAcid('G177'); selectID(glviewer,177)" class="btn btn-info conserved50_active

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Line: 255
Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="G Local position: 177 Global position: 719" > G

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '211', 
                            '860',
                            'serine');" 
                            onmouseout="hideAminoAcid('S', 'S211')"  
                            onmouseover="showAminoAcid('S211'); selectID(glviewer,211)" 
                            class="btn btn-default
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			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="S
Local position: 211
Global position: 860"
                        >
                            S                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'default', '', '212', '861', 'valine');" onmouseout="hideAminoAcid('V', 'V212')" onmouseover="showAminoAcid('V212'); selectID(glviewer,212)" class="btn btn-default

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Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="V Local position: 212 Global position: 861" > V

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '246', 
                            '950',
                            'leucine');" 
                            onmouseout="hideAminoAcid('L', 'L246')"  
                            onmouseover="showAminoAcid('L246'); selectID(glviewer,246)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="L
Local position: 246
Global position: 950"
                        >
                            L                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'default', '', '247', '951', 'valine');" onmouseout="hideAminoAcid('V', 'V247')" onmouseover="showAminoAcid('V247'); selectID(glviewer,247)" class="btn btn-default

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Line: 255
Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="V Local position: 247 Global position: 951" > V

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '281', 
                            '1201',
                            'leucine');" 
                            onmouseout="hideAminoAcid('L', 'L281')"  
                            onmouseover="showAminoAcid('L281'); selectID(glviewer,281)" 
                            class="btn btn-default
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			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="L
Local position: 281
Global position: 1201"
                        >
                            L                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'default', '', '282', '1202', 'tyrosine');" onmouseout="hideAminoAcid('Y', 'Y282')" onmouseover="showAminoAcid('Y282'); selectID(glviewer,282)" class="btn btn-default

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Line: 255
Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="Y Local position: 282 Global position: 1202" > Y

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'info', 
                            '', 
                            '316', 
                            '1401',
                            'isoleucine');" 
                            onmouseout="hideAminoAcid('I', 'I316')"  
                            onmouseover="showAminoAcid('I316'); selectID(glviewer,316)" 
                            class="btn btn-info conserved50_active
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			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="I
Local position: 316
Global position: 1401"
                        >
                            I                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'danger', ' coevo_2_inactive', '317', '1402', 'glycine');" onmouseout="hideAminoAcid('G', 'G317')" onmouseover="showAminoAcid('G317'); selectID(glviewer,317)" class="btn btn-danger coevo_2_inactive conserved80_active

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File: /scratch/html/glutantbase/application/views/view.php
Line: 255
Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="G Local position: 317 Global position: 1402" > G

									

						                        
Loop | bend | hydrogen bonded turn', 
                            'default', 
                            '', 
                            '351', 
                            '1489',
                            'glutamic acid');" 
                            onmouseout="hideAminoAcid('E', 'E351')"  
                            onmouseover="showAminoAcid('E351'); selectID(glviewer,351)" 
                            class="btn btn-default
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			File: /scratch/html/glutantbase/application/views/view.php

			Line: 255

			Function: _error_handler			

			File: /scratch/html/glutantbase/application/libraries/Template.php

			Line: 13

			Function: view			

			File: /scratch/html/glutantbase/application/controllers/Protein.php

			Line: 188

			Function: show			

			File: /scratch/html/glutantbase/index.php

			Line: 315

			Function: require_once			
 ss_loop_inactive" 
                            style=""
                            title="E
Local position: 351
Global position: 1489"
                        >
                            E                            
                        					                        						                        

Loop | bend | hydrogen bonded turn', 'default', '', '352', '1490', 'glycine');" onmouseout="hideAminoAcid('G', 'G352')" onmouseover="showAminoAcid('G352'); selectID(glviewer,352)" class="btn btn-default

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File: /scratch/html/glutantbase/application/views/view.php
Line: 255
Function: _error_handler

File: /scratch/html/glutantbase/application/libraries/Template.php
Line: 13
Function: view

File: /scratch/html/glutantbase/application/controllers/Protein.php
Line: 188
Function: show

File: /scratch/html/glutantbase/index.php
Line: 315
Function: require_once

ss_loop_inactive" style="" title="G Local position: 352 Global position: 1490" > G