VTR

24 main matches found (58 matches in total )

Execution time: 23.0 seconds

Match RMSD = 0.48

VTR = 0.01

Average AVD = 0.43 Å

Parameters

Chains(6M0J.pdb ): E versus A

Chains(6M0J_africa_mut.pdb ) E versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A6M0J 791 34 5 25 0 0 1 65
B6M0J_africa_mut 791 40 1 24 0 1 1 67

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E E37 Y505 E37 Y505 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-E A-E T27 Y473 T27 Y473 Hydrophobic Hydrophobic 0.38 View
A-E A-E Y83 Y489 Y83 Y489 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-E A-E R357 T500 R357 T500 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-E A-E Y41 N501 Y41 Y501 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.41 View
A-E A-E D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-E A-E Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.28 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.35 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.32 View
A-E A-E R393 Y505 R393 Y505 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.36 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.29 View
A-E A-E E35 Q493 E35 Q493 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-E A-E Q42 Y449 Q42 Y449 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-E A-E D355 T500 D355 T500 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.49 View
A-E A-E T27 A475 T27 A475 Hydrophobic Hydrophobic 0.37 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.34 View
A-E A-E K31 E484 K31 K484 Attractive Repulsive 1.53 View
A-E A-E K353 G496 K353 G496 Hydrogen Bonds Hydrogen Bonds 0.65 View
A-E A-E Y83 N487 Y83 N487 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-E A-E Y41 Q498 Y41 Q498 Hydrophobic Hydrophobic 0.29 View
A-E A-E D30 F456 D30 F456 Hydrophobic Hydrophobic 0.19 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.54 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.39 View
A-E A-E L79 F486 L79 F486 Hydrophobic Hydrophobic 0.77 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.29 View
A-E A-E G354 G502 G354 G502 Hydrogen Bonds Hydrogen Bonds 1.28 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.47 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.33 View
A-E A-E M82 F486 M82 F486 Hydrophobic Hydrophobic 0.34 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.39 View
A-E A-E T27 Y489 T27 Y489 Hydrophobic Hydrophobic 0.41 View
A-E A-E K31 Y489 K31 Y489 Hydrophobic Hydrophobic 0.36 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.37 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.25 View
A-E A-E E37 R403 E37 R403 Attractive Attractive 0.39 View
A-E A-E Y41 T500 Y41 T500 Hydrogen Bonds Hydrogen Bonds 0.43 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.31 View
A-E A-E Y83 F486 Y83 F486 Aromatic Stacking Aromatic Stacking 0.25 View
A-E A-E D30 F456 D30 F456 Hydrophobic Hydrophobic 0.22 View
A-E A-E Q42 Q498 Q42 Q498 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.41 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.27 View
A-E A-E E37 Y505 E37 Y505 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-E A-E D38 Y449 D38 Y449 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.41 View
A-E A-E K353 Y505 K353 Y505 Hydrophobic Hydrophobic 0.38 View
A-E A-E H34 Y453 H34 Y453 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-E A-E Y83 F486 Y83 F486 Hydrophobic Hydrophobic 0.33 View
A-E A-E T27 Y489 T27 Y489 Hydrophobic Hydrophobic 0.38 View
A-E A-E T27 F456 T27 F456 Hydrophobic Hydrophobic 0.39 View
A-E A-E F28 Y489 F28 Y489 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-E A-E Q42 G446 Q42 G446 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-E A-E K31 F456 K31 F456 Hydrophobic Hydrophobic 0.27 View
A-E A-E Q24 N487 Q24 N487 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-E A-E K31 Q493 K31 Q493 Hydrogen Bonds Hydrogen Bonds 0.59 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 6M0J | 6M0J_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
6M0J A-E D30 K417 Attractive 4.02 View
6M0J A-E D30 K417 Attractive, Hydrogen Bonds 2.90 View
6M0J A-E K31 E484 Attractive 5.74 View
6M0J A-E Y41 T500 Hydrogen Bonds 3.50 View
6M0J A-E Y41 N501 Hydrogen Bonds 3.43 View
6M0J A-E K353 G502 Hydrogen Bonds 2.78 View
6M0J_africa_mut A-E E37 Y505 Hydrophobic 4.44 View
6M0J_africa_mut A-E N330 T500 Hydrogen Bonds 3.25 View
6M0J_africa_mut A-E K353 Q498 Hydrogen Bonds 3.30 View
6M0J_africa_mut A-E K353 Y501 Hydrophobic 4.48 View
6M0J_africa_mut A-E K353 Y501 Hydrophobic 4.34 View
6M0J_africa_mut A-E K353 Y501 Hydrophobic 4.39 View
6M0J_africa_mut A-E K353 Y501 Hydrogen Bonds 3.70 View
6M0J_africa_mut A-E K353 Y505 Hydrophobic 4.40 View
6M0J_africa_mut A-E D355 Y501 Hydrophobic 3.96 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph