5M0I-I-C

PDB UniProt PubMed Cluster S276 Cluster C308 Cluster I1427

PDB Title	CRYSTAL STRUCTURE OF THE NUCLEAR COMPLEX WITH SHE2P AND THE ASH1 MRNA E3-LOCALIZATION ELEMENT
Resolution (Å)	2.410
Classification	TRANSPORT PROTEIN

Peptide

Description	SWI5-dependent HO expression protein 3
Organism	Saccharomyces cerevisiae
Chain	I
Length	7
Binding Area (Å²)	495.58
Hydrophobic (% a.a.)	85%
Molecular Weight	667.79
Aromaticity	0.00
Instability	63.60
Isoelectric Point	5.52
Sequence	ISVPPGV

Protein

Description	SWI5-dependent HO expression protein 2
Organism	Saccharomyces cerevisiae
Chain	C
Length	241
Binding Area (Å²)	397.21
Molecular Weight	-
Aromaticity	0.10
Instability	-
Isoelectric Point	4.83
Sequence	LGSDIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKDPEADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDGTNIGETDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKWHDKFGKLKX

Clustering Classification

Sequence cluster	S 276
Contact cluster	C308
Interface cluster	I1427

Similar complexes

Is the complex classified in the same cluster?

Complex	Sequence cluster (S276)	Contact cluster (C308)	Interface cluster (I1427)
5m0i-H-B
5m0i-J-D

Please, cite:

Pedro M. Martins, Lucianna H. Santos, Diego Mariano, Felippe C. Queiroz, Luana L. Bastos, Isabela de S. Gomes, Pedro H. C. Fischer, Rafael E. O. Rocha, Sabrina A. Silveira, Leonardo H. F. de Lima, Mariana T. Q. de Magalhães, Maria G. A. Oliveira & Raquel C. de Melo-Minardi (2021). Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm. Bioinformatics, 22(1), 1-20.

Designed by:
Dr Pedro Martins
Dr Lucianna H. Santos
Dr Diego Mariano
Prof. Dr Raquel de Melo-Minardi

Back-end:
Dr Pedro Martins

Front-end:
Dr Pedro Martins / Dr Diego Mariano
Business vector created by freepik - www.freepik.com

Financing and support:
CAPES / UFMG / LBS

Propedia v2.3

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Protein-peptide complexes updated
Clustering method based on structural signatures included
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