VIRAL PROTEIN, IMMUNE SYSTEM
EM STRUCTURE OF SARS-COV-2 SPIKE GLYCOPROTEIN (ONE RBD UP) IN COMPLEX WITH COVOX-253H55L FAB:

0 - B THR 478 O    VS L TYR 33 OH  
Distance: 4.694629 - Hydrogen Bonds, 
1 - B THR 478 OG1  VS L TYR 33 OH  
Distance: 2.994162 - Hydrogen Bonds, 
2 - B THR 478 CG2  VS L TYR 33 CD1 
Distance: 5.361510 - Hydrophobic, 
3 - B THR 478 CG2  VS L TYR 33 CE1 
Distance: 4.801223 - Hydrophobic, 
4 - B THR 478 CG2  VS L TYR 33 CE2 
Distance: 5.328707 - Hydrophobic, 
5 - B PRO 479 O    VS L TYR 33 OH  
Distance: 4.694692 - Hydrogen Bonds, 
6 - B PHE 486 O    VS L TYR 33 OH  
Distance: 4.221904 - Hydrogen Bonds, 
7 - B PHE 486 CB   VS L TYR 33 CD1 
Distance: 4.844441 - Hydrophobic, 
8 - B PHE 486 CB   VS L TYR 33 CE1 
Distance: 4.620542 - Hydrophobic, 
9 - B PHE 486 CG   VS L TYR 33 CD1 
Distance: 5.234218 - Hydrophobic, 
10 - B PHE 486 CG   VS L TYR 33 CE1 
Distance: 5.076449 - Hydrophobic, 
11 - B PHE 486 CD2  VS L TYR 33 CD1 
Distance: 4.684840 - Hydrophobic, 
12 - B PHE 486 CD2  VS L TYR 33 CE1 
Distance: 4.485073 - Hydrophobic, 
13 - B PHE 486 CE2  VS L TYR 33 CE1 
Distance: 5.486495 - Hydrophobic, 
14 - B PHE 486 CB   VS L TYR 92 CB  
Distance: 5.359289 - Hydrophobic, 
15 - B PHE 486 CB   VS L TYR 92 CG  
Distance: 5.371230 - Hydrophobic, 
16 - B PHE 486 CB   VS L TYR 92 CD2 
Distance: 4.421907 - Hydrophobic, 
17 - B PHE 486 CB   VS L TYR 92 CE2 
Distance: 5.056377 - Hydrophobic, 
18 - B PHE 486 CG   VS L TYR 92 CB  
Distance: 5.495128 - Hydrophobic, 
19 - B PHE 486 CG   VS L TYR 92 CG  
Distance: 5.238168 - Hydrophobic, 
20 - B PHE 486 CG   VS L TYR 92 CG  
Distance: 5.392560 - Aromatic Stacking, 
21 - B PHE 486 CG   VS L TYR 92 CD2 
Distance: 4.225301 - Hydrophobic, 
22 - B PHE 486 CG   VS L TYR 92 CE2 
Distance: 4.607018 - Hydrophobic, 
23 - B PHE 486 CD1  VS L TYR 92 CD2 
Distance: 4.878155 - Hydrophobic, 
24 - B PHE 486 CD1  VS L TYR 92 CE2 
Distance: 5.332063 - Hydrophobic, 
25 - B PHE 486 CD2  VS L TYR 92 CG  
Distance: 5.232116 - Hydrophobic, 
26 - B PHE 486 CD2  VS L TYR 92 CD2 
Distance: 4.021087 - Hydrophobic, 
27 - B PHE 486 CD2  VS L TYR 92 CE2 
Distance: 3.975615 - Hydrophobic, 
28 - B PHE 486 CE1  VS L TYR 92 CD2 
Distance: 5.306696 - Hydrophobic, 
29 - B PHE 486 CE2  VS L TYR 92 CD2 
Distance: 4.528124 - Hydrophobic, 
30 - B PHE 486 CE2  VS L TYR 92 CE2 
Distance: 4.208414 - Hydrophobic, 
31 - B PHE 486 CZ   VS L TYR 92 CD2 
Distance: 5.150390 - Hydrophobic, 
32 - B PHE 486 CZ   VS L TYR 92 CE2 
Distance: 5.002017 - Hydrophobic, 
33 - B PHE 486 CB   VS L TRP 97 CZ2 
Distance: 3.981016 - Hydrophobic, 
34 - B PHE 486 CB   VS L TRP 97 CZ3 
Distance: 4.821502 - Hydrophobic, 
35 - B PHE 486 CB   VS L TRP 97 CH2 
Distance: 3.869277 - Hydrophobic, 
36 - B PHE 486 CG   VS L TRP 97 CG  
Distance: 6.945257 - Aromatic Stacking, 
37 - B PHE 486 CG   VS L TRP 97 CZ2 
Distance: 4.886373 - Hydrophobic, 
38 - B PHE 486 CG   VS L TRP 97 CZ3 
Distance: 5.024736 - Hydrophobic, 
39 - B PHE 486 CG   VS L TRP 97 CH2 
Distance: 4.404554 - Hydrophobic, 
40 - B PHE 486 CD1  VS L TRP 97 CZ2 
Distance: 4.913896 - Hydrophobic, 
41 - B PHE 486 CD1  VS L TRP 97 CZ3 
Distance: 4.466018 - Hydrophobic, 
42 - B PHE 486 CD1  VS L TRP 97 CH2 
Distance: 4.072622 - Hydrophobic, 
43 - B PHE 486 CE1  VS L TRP 97 CZ3 
Distance: 5.260935 - Hydrophobic, 
44 - B PHE 486 CE1  VS L TRP 97 CH2 
Distance: 5.154046 - Hydrophobic, 
45 - B CYS 488 SG   VS L TYR 33 OH  
Distance: 4.204288 - Hydrogen Bonds,