VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - D ARG 403 CB VS F TYR 27 CE1 Distance: 5.486211 - Hydrophobic, 1 - D ARG 403 CG VS F TYR 27 CD1 Distance: 5.417529 - Hydrophobic, 2 - D ARG 403 CG VS F TYR 27 CE1 Distance: 5.115615 - Hydrophobic, 3 - D ARG 403 NE VS F TYR 27 OH Distance: 3.907099 - Hydrogen Bonds, 4 - D ARG 403 NH2 VS F TYR 27 OH Distance: 3.814082 - Hydrogen Bonds, 5 - D LYS 417 NZ VS F ALA 104 O Distance: 3.888602 - Hydrogen Bonds, 6 - D LYS 417 CD VS F TYR 105 CD1 Distance: 4.953144 - Hydrophobic, 7 - D LYS 417 CD VS F TYR 105 CE1 Distance: 5.328721 - Hydrophobic, 8 - D GLY 446 O VS F ASN 77 ND2 Distance: 3.084118 - Hydrogen Bonds, 9 - D TYR 449 OH VS F GLY 26 N Distance: 4.304139 - Hydrogen Bonds, 10 - D TYR 449 OH VS F GLY 26 O Distance: 4.383466 - Hydrogen Bonds, 11 - D TYR 449 CG VS F PHE 29 CG Distance: 6.694380 - Aromatic Stacking, 12 - D TYR 449 CE1 VS F PHE 29 CD1 Distance: 5.397348 - Hydrophobic, 13 - D TYR 449 CE2 VS F PHE 29 CB Distance: 4.714947 - Hydrophobic, 14 - D TYR 449 CE2 VS F PHE 29 CG Distance: 5.175868 - Hydrophobic, 15 - D TYR 449 CE2 VS F PHE 29 CD1 Distance: 4.600064 - Hydrophobic, 16 - D TYR 449 OH VS F ASN 77 OD1 Distance: 3.267096 - Hydrogen Bonds, 17 - D TYR 449 OH VS F ASN 77 ND2 Distance: 3.389549 - Hydrogen Bonds, 18 - D TYR 453 CG VS F TYR 27 CD1 Distance: 6.768425 - Aromatic Stacking, 19 - D TYR 453 CE2 VS F TYR 27 CE1 Distance: 5.015957 - Hydrophobic, 20 - D TYR 453 OH VS F TYR 27 O Distance: 4.785387 - Hydrogen Bonds, 21 - D TYR 453 OH VS F TYR 27 OH Distance: 4.048208 - Hydrogen Bonds, 22 - D TYR 453 OH VS F ARG 31 NE Distance: 4.798595 - Hydrogen Bonds, 23 - D LEU 455 CD2 VS F PRO 100 CG Distance: 5.098511 - Hydrophobic, 24 - D LEU 455 CB VS F TYR 105 CD1 Distance: 5.046248 - Hydrophobic, 25 - D LEU 455 CB VS F TYR 105 CE1 Distance: 5.151217 - Hydrophobic, 26 - D LEU 455 CG VS F TYR 105 CB Distance: 4.615892 - Hydrophobic, 27 - D LEU 455 CG VS F TYR 105 CG Distance: 4.196878 - Hydrophobic, 28 - D LEU 455 CG VS F TYR 105 CD1 Distance: 3.585626 - Hydrophobic, 29 - D LEU 455 CG VS F TYR 105 CD2 Distance: 4.958551 - Hydrophobic, 30 - D LEU 455 CG VS F TYR 105 CE1 Distance: 3.888931 - Hydrophobic, 31 - D LEU 455 CG VS F TYR 105 CE2 Distance: 5.193374 - Hydrophobic, 32 - D LEU 455 CD1 VS F TYR 105 CB Distance: 4.170865 - Hydrophobic, 33 - D LEU 455 CD1 VS F TYR 105 CG Distance: 4.169092 - Hydrophobic, 34 - D LEU 455 CD1 VS F TYR 105 CD1 Distance: 3.599047 - Hydrophobic, 35 - D LEU 455 CD1 VS F TYR 105 CD2 Distance: 5.239514 - Hydrophobic, 36 - D LEU 455 CD1 VS F TYR 105 CE1 Distance: 4.311837 - Hydrophobic, 37 - D LEU 455 CD2 VS F TYR 105 CB Distance: 4.284820 - Hydrophobic, 38 - D LEU 455 CD2 VS F TYR 105 CG Distance: 3.939997 - Hydrophobic, 39 - D LEU 455 CD2 VS F TYR 105 CD1 Distance: 3.799127 - Hydrophobic, 40 - D LEU 455 CD2 VS F TYR 105 CD2 Distance: 4.417735 - Hydrophobic, 41 - D LEU 455 CD2 VS F TYR 105 CE1 Distance: 4.177959 - Hydrophobic, 42 - D LEU 455 CD2 VS F TYR 105 CE2 Distance: 4.754528 - Hydrophobic, 43 - D PHE 456 CD2 VS F PRO 100 CB Distance: 5.498153 - Hydrophobic, 44 - D PHE 456 CE2 VS F PRO 100 CB Distance: 4.773095 - Hydrophobic, 45 - D PHE 456 CE2 VS F PRO 100 CG Distance: 4.790813 - Hydrophobic, 46 - D PHE 456 CZ VS F PRO 100 CB Distance: 5.247897 - Hydrophobic, 47 - D PHE 456 CZ VS F PRO 100 CG Distance: 5.264093 - Hydrophobic, 48 - D PHE 456 CB VS F TYR 105 CE1 Distance: 4.861333 - Hydrophobic, 49 - D PHE 456 CG VS F TYR 105 CG Distance: 6.306244 - Aromatic Stacking, 50 - D PHE 456 CG VS F TYR 105 CE1 Distance: 5.147442 - Hydrophobic, 51 - D PHE 456 CD2 VS F TYR 105 CD1 Distance: 5.271900 - Hydrophobic, 52 - D PHE 456 CD2 VS F TYR 105 CE1 Distance: 4.453265 - Hydrophobic, 53 - D PHE 456 CD2 VS F TYR 105 CE2 Distance: 5.358301 - Hydrophobic, 54 - D PHE 456 CE2 VS F TYR 105 CE1 Distance: 5.222977 - Hydrophobic, 55 - D VAL 483 CG1 VS F ILE 57 CG2 Distance: 5.051166 - Hydrophobic, 56 - D VAL 483 CG1 VS F ILE 57 CD1 Distance: 4.909578 - Hydrophobic, 57 - D GLU 484 OE1 VS F ASN 32 ND2 Distance: 4.581438 - Hydrogen Bonds, 58 - D GLU 484 CB VS F THR 52 CG2 Distance: 3.789014 - Hydrophobic, 59 - D GLU 484 CG VS F THR 52 CG2 Distance: 4.461729 - Hydrophobic, 60 - D GLU 484 OE2 VS F THR 52 OG1 Distance: 4.062103 - Hydrogen Bonds, 61 - D GLU 484 OE1 VS F ARG 54 NE Distance: 6.031707 - Attractive, 62 - D GLU 484 OE1 VS F ARG 54 CZ Distance: 6.084667 - Attractive, 63 - D GLU 484 OE1 VS F ARG 54 NH2 Distance: 5.464843 - Attractive, 64 - D GLU 484 OE2 VS F ARG 54 NE Distance: 4.893805 - Attractive, Hydrogen Bonds, 65 - D GLU 484 OE2 VS F ARG 54 CZ Distance: 5.277287 - Attractive, 66 - D GLU 484 OE2 VS F ARG 54 NH1 Distance: 6.481887 - Attractive, 67 - D GLU 484 OE2 VS F ARG 54 NH2 Distance: 4.759099 - Attractive, Hydrogen Bonds, 68 - D GLU 484 CB VS F ILE 57 CB Distance: 5.249950 - Hydrophobic, 69 - D GLU 484 CB VS F ILE 57 CG2 Distance: 5.080962 - Hydrophobic, 70 - D GLU 484 CB VS F ILE 57 CD1 Distance: 4.484376 - Hydrophobic, 71 - D GLU 484 CG VS F ILE 57 CD1 Distance: 5.069922 - Hydrophobic, 72 - D GLY 485 O VS F TYR 59 OH Distance: 4.180684 - Hydrogen Bonds, 73 - D PHE 486 CG VS F LEU 47 CD2 Distance: 5.149739 - Hydrophobic, 74 - D PHE 486 CD2 VS F LEU 47 CB Distance: 5.075087 - Hydrophobic, 75 - D PHE 486 CD2 VS F LEU 47 CG Distance: 4.838776 - Hydrophobic, 76 - D PHE 486 CD2 VS F LEU 47 CD2 Distance: 4.001863 - Hydrophobic, 77 - D PHE 486 CE2 VS F LEU 47 CB Distance: 4.401853 - Hydrophobic, 78 - D PHE 486 CE2 VS F LEU 47 CG Distance: 4.178669 - Hydrophobic, 79 - D PHE 486 CE2 VS F LEU 47 CD2 Distance: 3.751158 - Hydrophobic, 80 - D PHE 486 CZ VS F LEU 47 CB Distance: 5.320322 - Hydrophobic, 81 - D PHE 486 CZ VS F LEU 47 CG Distance: 4.970234 - Hydrophobic, 82 - D PHE 486 CZ VS F LEU 47 CD2 Distance: 4.736275 - Hydrophobic, 83 - D PHE 486 N VS F TYR 59 OH Distance: 4.644753 - Hydrogen Bonds, 84 - D PHE 486 CB VS F TYR 59 CD1 Distance: 4.689238 - Hydrophobic, 85 - D PHE 486 CB VS F TYR 59 CE1 Distance: 4.546979 - Hydrophobic, 86 - D PHE 486 CG VS F TYR 59 CG Distance: 4.938798 - Hydrophobic, 87 - D PHE 486 CG VS F TYR 59 CG Distance: 4.649123 - Aromatic Stacking, 88 - D PHE 486 CG VS F TYR 59 CD1 Distance: 3.880896 - Hydrophobic, 89 - D PHE 486 CG VS F TYR 59 CE1 Distance: 3.837661 - Hydrophobic, 90 - D PHE 486 CD1 VS F TYR 59 CB Distance: 4.738708 - Hydrophobic, 91 - D PHE 486 CD1 VS F TYR 59 CG Distance: 4.519485 - Hydrophobic, 92 - D PHE 486 CD1 VS F TYR 59 CD1 Distance: 3.586286 - Hydrophobic, 93 - D PHE 486 CD1 VS F TYR 59 CE1 Distance: 4.003705 - Hydrophobic, 94 - D PHE 486 CD2 VS F TYR 59 CG Distance: 5.348184 - Hydrophobic, 95 - D PHE 486 CD2 VS F TYR 59 CD1 Distance: 4.105245 - Hydrophobic, 96 - D PHE 486 CD2 VS F TYR 59 CE1 Distance: 3.734411 - Hydrophobic, 97 - D PHE 486 CE1 VS F TYR 59 CB Distance: 4.664224 - Hydrophobic, 98 - D PHE 486 CE1 VS F TYR 59 CG Distance: 4.553795 - Hydrophobic, 99 - D PHE 486 CE1 VS F TYR 59 CD1 Distance: 3.540825 - Hydrophobic, 100 - D PHE 486 CE1 VS F TYR 59 CE1 Distance: 4.073497 - Hydrophobic, 101 - D PHE 486 CE2 VS F TYR 59 CG Distance: 5.374863 - Hydrophobic, 102 - D PHE 486 CE2 VS F TYR 59 CD1 Distance: 4.064445 - Hydrophobic, 103 - D PHE 486 CE2 VS F TYR 59 CE1 Distance: 3.810251 - Hydrophobic, 104 - D PHE 486 CZ VS F TYR 59 CB Distance: 5.365647 - Hydrophobic, 105 - D PHE 486 CZ VS F TYR 59 CG Distance: 4.992804 - Hydrophobic, 106 - D PHE 486 CZ VS F TYR 59 CD1 Distance: 3.785946 - Hydrophobic, 107 - D PHE 486 CZ VS F TYR 59 CE1 Distance: 3.971852 - Hydrophobic, 108 - D PHE 486 CE1 VS F ALA 61 CB Distance: 4.993563 - Hydrophobic, 109 - D PHE 486 CE2 VS F ALA 61 CB Distance: 4.934820 - Hydrophobic, 110 - D PHE 486 CZ VS F ALA 61 CB Distance: 4.200528 - Hydrophobic, 111 - D TYR 489 CD2 VS F ALA 33 CB Distance: 5.277769 - Hydrophobic, 112 - D TYR 489 CE2 VS F ALA 33 CB Distance: 5.498293 - Hydrophobic, 113 - D TYR 489 CD2 VS F ASP 99 CB Distance: 4.517572 - Hydrophobic, 114 - D TYR 489 CE2 VS F ASP 99 CB Distance: 3.729726 - Hydrophobic, 115 - D TYR 489 OH VS F ASP 99 O Distance: 2.868298 - Hydrogen Bonds, 116 - D TYR 489 CB VS F PRO 100 CB Distance: 5.351555 - Hydrophobic, 117 - D TYR 489 CB VS F PRO 100 CG Distance: 5.415348 - Hydrophobic, 118 - D TYR 489 CG VS F PRO 100 CB Distance: 4.464195 - Hydrophobic, 119 - D TYR 489 CG VS F PRO 100 CG Distance: 4.763533 - Hydrophobic, 120 - D TYR 489 CD1 VS F PRO 100 CB Distance: 4.689514 - Hydrophobic, 121 - D TYR 489 CD1 VS F PRO 100 CG Distance: 5.379114 - Hydrophobic, 122 - D TYR 489 CD2 VS F PRO 100 CB Distance: 3.958516 - Hydrophobic, 123 - D TYR 489 CD2 VS F PRO 100 CG Distance: 4.025961 - Hydrophobic, 124 - D TYR 489 CE1 VS F PRO 100 CB Distance: 4.426479 - Hydrophobic, 125 - D TYR 489 CE1 VS F PRO 100 CG Distance: 5.328639 - Hydrophobic, 126 - D TYR 489 CE2 VS F PRO 100 CB Distance: 3.649201 - Hydrophobic, 127 - D TYR 489 CE2 VS F PRO 100 CG Distance: 3.966633 - Hydrophobic, 128 - D PHE 490 O VS F ASN 32 ND2 Distance: 2.939586 - Hydrogen Bonds, 129 - D PHE 490 CB VS F ASN 32 CB Distance: 4.485843 - Hydrophobic, 130 - D PHE 490 CG VS F ASN 32 CB Distance: 5.277996 - Hydrophobic, 131 - D PHE 490 CD2 VS F ASN 32 CB Distance: 4.986957 - Hydrophobic, 132 - D LEU 492 O VS F ASN 32 N Distance: 4.704661 - Hydrogen Bonds, 133 - D GLN 493 CB VS F ARG 31 CB Distance: 5.328187 - Hydrophobic, 134 - D GLN 493 CB VS F ARG 31 CG Distance: 5.325646 - Hydrophobic, 135 - D GLN 493 CG VS F ARG 31 CB Distance: 5.389445 - Hydrophobic, 136 - D GLN 493 CG VS F ARG 31 CG Distance: 5.441105 - Hydrophobic, 137 - D GLN 493 OE1 VS F ARG 31 N Distance: 4.665238 - Hydrogen Bonds, 138 - D GLN 493 OE1 VS F ARG 31 NE Distance: 3.070530 - Hydrogen Bonds, 139 - D GLN 493 OE1 VS F ARG 31 NH2 Distance: 4.794192 - Hydrogen Bonds, 140 - D GLN 493 CG VS F ASN 32 CB Distance: 5.423646 - Hydrophobic, 141 - D GLN 493 OE1 VS F ASN 32 N Distance: 2.906367 - Hydrogen Bonds, 142 - D GLN 493 OE1 VS F ASN 32 ND2 Distance: 3.949728 - Hydrogen Bonds, 143 - D GLN 493 NE2 VS F ASN 32 OD1 Distance: 4.182464 - Hydrogen Bonds, 144 - D SER 494 N VS F GLY 30 O Distance: 2.936099 - Hydrogen Bonds, 145 - D SER 494 OG VS F GLY 30 O Distance: 3.911869 - Hydrogen Bonds, 146 - D SER 494 O VS F ARG 31 N Distance: 4.699450 - Hydrogen Bonds, 147 - D SER 494 OG VS F ARG 53 NE Distance: 4.318358 - Hydrogen Bonds, 148 - D TYR 495 O VS F TYR 27 N Distance: 3.477855 - Hydrogen Bonds, 149 - D TYR 495 CB VS F TYR 27 CD1 Distance: 5.450087 - Hydrophobic, 150 - D TYR 495 CD2 VS F TYR 27 CD1 Distance: 4.839185 - Hydrophobic, 151 - D TYR 495 CD2 VS F TYR 27 CE1 Distance: 4.647102 - Hydrophobic, 152 - D TYR 495 CE2 VS F TYR 27 CE1 Distance: 5.117145 - Hydrophobic, 153 - D GLY 496 N VS F GLY 26 O Distance: 4.414191 - Hydrogen Bonds, 154 - D GLY 496 O VS F GLY 26 N Distance: 4.282522 - Hydrogen Bonds, 155 - D GLY 496 O VS F TYR 27 N Distance: 4.079437 - Hydrogen Bonds, 156 - D GLN 498 OE1 VS F GLY 26 N Distance: 2.864444 - Hydrogen Bonds, 157 - D GLN 498 OE1 VS F TYR 27 N Distance: 4.864854 - Hydrogen Bonds, 158 - D TYR 505 CE1 VS F GLN 3 CG Distance: 5.444571 - Hydrophobic, 159 - D TYR 505 CE2 VS F GLN 3 CG Distance: 5.188494 - Hydrophobic, 160 - D TYR 505 OH VS F GLN 3 NE2 Distance: 4.446012 - Hydrogen Bonds, 161 - D TYR 505 CG VS F TYR 27 CB Distance: 5.450500 - Hydrophobic, 162 - D TYR 505 CG VS F TYR 27 CG Distance: 5.361404 - Hydrophobic, 163 - D TYR 505 CG VS F TYR 27 CG Distance: 5.076456 - Aromatic Stacking, 164 - D TYR 505 CG VS F TYR 27 CD1 Distance: 5.335507 - Hydrophobic, 165 - D TYR 505 CD2 VS F TYR 27 CB Distance: 4.254106 - Hydrophobic, 166 - D TYR 505 CD2 VS F TYR 27 CG Distance: 4.014335 - Hydrophobic, 167 - D TYR 505 CD2 VS F TYR 27 CD1 Distance: 4.029320 - Hydrophobic, 168 - D TYR 505 CD2 VS F TYR 27 CD2 Distance: 4.458215 - Hydrophobic, 169 - D TYR 505 CD2 VS F TYR 27 CE1 Distance: 4.487414 - Hydrophobic, 170 - D TYR 505 CD2 VS F TYR 27 CE2 Distance: 4.872146 - Hydrophobic, 171 - D TYR 505 CE2 VS F TYR 27 CB Distance: 4.344285 - Hydrophobic, 172 - D TYR 505 CE2 VS F TYR 27 CG Distance: 3.799856 - Hydrophobic, 173 - D TYR 505 CE2 VS F TYR 27 CD1 Distance: 4.001422 - Hydrophobic, 174 - D TYR 505 CE2 VS F TYR 27 CD2 Distance: 3.815307 - Hydrophobic, 175 - D TYR 505 CE2 VS F TYR 27 CE1 Distance: 4.208452 - Hydrophobic, 176 - D TYR 505 CE2 VS F TYR 27 CE2 Distance: 4.026470 - Hydrophobic,