VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - C ARG 403 CB VS E TYR 27 CE1 Distance: 5.483575 - Hydrophobic, 1 - C ARG 403 CG VS E TYR 27 CD1 Distance: 5.414253 - Hydrophobic, 2 - C ARG 403 CG VS E TYR 27 CE1 Distance: 5.110342 - Hydrophobic, 3 - C ARG 403 NE VS E TYR 27 OH Distance: 3.893007 - Hydrogen Bonds, 4 - C ARG 403 NH2 VS E TYR 27 OH Distance: 3.791991 - Hydrogen Bonds, 5 - C LYS 417 NZ VS E ALA 104 O Distance: 3.893435 - Hydrogen Bonds, 6 - C LYS 417 CG VS E TYR 105 CD1 Distance: 5.481753 - Hydrophobic, 7 - C LYS 417 CD VS E TYR 105 CD1 Distance: 4.928979 - Hydrophobic, 8 - C LYS 417 CD VS E TYR 105 CE1 Distance: 5.279759 - Hydrophobic, 9 - C GLY 446 O VS E ASN 77 ND2 Distance: 3.080828 - Hydrogen Bonds, 10 - C TYR 449 OH VS E GLY 26 N Distance: 4.297583 - Hydrogen Bonds, 11 - C TYR 449 OH VS E GLY 26 O Distance: 4.397181 - Hydrogen Bonds, 12 - C TYR 449 CG VS E PHE 29 CG Distance: 6.695963 - Aromatic Stacking, 13 - C TYR 449 CE1 VS E PHE 29 CD1 Distance: 5.401088 - Hydrophobic, 14 - C TYR 449 CE2 VS E PHE 29 CB Distance: 4.722885 - Hydrophobic, 15 - C TYR 449 CE2 VS E PHE 29 CG Distance: 5.179458 - Hydrophobic, 16 - C TYR 449 CE2 VS E PHE 29 CD1 Distance: 4.599736 - Hydrophobic, 17 - C TYR 449 OH VS E ASN 77 OD1 Distance: 3.264560 - Hydrogen Bonds, 18 - C TYR 449 OH VS E ASN 77 ND2 Distance: 3.386956 - Hydrogen Bonds, 19 - C TYR 453 CG VS E TYR 27 CD1 Distance: 6.763235 - Aromatic Stacking, 20 - C TYR 453 CE2 VS E TYR 27 CE1 Distance: 5.008596 - Hydrophobic, 21 - C TYR 453 OH VS E TYR 27 O Distance: 4.767083 - Hydrogen Bonds, 22 - C TYR 453 OH VS E TYR 27 OH Distance: 4.068946 - Hydrogen Bonds, 23 - C LEU 455 CD2 VS E PRO 100 CG Distance: 5.124197 - Hydrophobic, 24 - C LEU 455 CB VS E TYR 105 CD1 Distance: 5.086328 - Hydrophobic, 25 - C LEU 455 CB VS E TYR 105 CE1 Distance: 5.150322 - Hydrophobic, 26 - C LEU 455 CG VS E TYR 105 CB Distance: 4.614061 - Hydrophobic, 27 - C LEU 455 CG VS E TYR 105 CG Distance: 4.150054 - Hydrophobic, 28 - C LEU 455 CG VS E TYR 105 CD1 Distance: 3.624278 - Hydrophobic, 29 - C LEU 455 CG VS E TYR 105 CD2 Distance: 4.807548 - Hydrophobic, 30 - C LEU 455 CG VS E TYR 105 CE1 Distance: 3.880306 - Hydrophobic, 31 - C LEU 455 CG VS E TYR 105 CE2 Distance: 5.015497 - Hydrophobic, 32 - C LEU 455 CD1 VS E TYR 105 CB Distance: 4.144090 - Hydrophobic, 33 - C LEU 455 CD1 VS E TYR 105 CG Distance: 4.096350 - Hydrophobic, 34 - C LEU 455 CD1 VS E TYR 105 CD1 Distance: 3.585679 - Hydrophobic, 35 - C LEU 455 CD1 VS E TYR 105 CD2 Distance: 5.091807 - Hydrophobic, 36 - C LEU 455 CD1 VS E TYR 105 CE1 Distance: 4.257750 - Hydrophobic, 37 - C LEU 455 CD2 VS E TYR 105 CB Distance: 4.299450 - Hydrophobic, 38 - C LEU 455 CD2 VS E TYR 105 CG Distance: 3.912493 - Hydrophobic, 39 - C LEU 455 CD2 VS E TYR 105 CD1 Distance: 3.869293 - Hydrophobic, 40 - C LEU 455 CD2 VS E TYR 105 CD2 Distance: 4.261459 - Hydrophobic, 41 - C LEU 455 CD2 VS E TYR 105 CE1 Distance: 4.206561 - Hydrophobic, 42 - C LEU 455 CD2 VS E TYR 105 CE2 Distance: 4.577146 - Hydrophobic, 43 - C PHE 456 CD2 VS E PRO 100 CB Distance: 5.493379 - Hydrophobic, 44 - C PHE 456 CE2 VS E PRO 100 CB Distance: 4.787223 - Hydrophobic, 45 - C PHE 456 CE2 VS E PRO 100 CG Distance: 4.801854 - Hydrophobic, 46 - C PHE 456 CZ VS E PRO 100 CB Distance: 5.265783 - Hydrophobic, 47 - C PHE 456 CZ VS E PRO 100 CG Distance: 5.282211 - Hydrophobic, 48 - C PHE 456 CB VS E TYR 105 CE1 Distance: 4.862611 - Hydrophobic, 49 - C PHE 456 CG VS E TYR 105 CG Distance: 6.289153 - Aromatic Stacking, 50 - C PHE 456 CG VS E TYR 105 CE1 Distance: 5.186220 - Hydrophobic, 51 - C PHE 456 CD2 VS E TYR 105 CD1 Distance: 5.357146 - Hydrophobic, 52 - C PHE 456 CD2 VS E TYR 105 CE1 Distance: 4.517621 - Hydrophobic, 53 - C PHE 456 CD2 VS E TYR 105 CE2 Distance: 5.214927 - Hydrophobic, 54 - C PHE 456 CE2 VS E TYR 105 CE1 Distance: 5.312284 - Hydrophobic, 55 - C PHE 456 CE2 VS E TYR 105 CE2 Distance: 5.494747 - Hydrophobic, 56 - C VAL 483 CG1 VS E ILE 57 CG2 Distance: 5.094024 - Hydrophobic, 57 - C VAL 483 CG1 VS E ILE 57 CD1 Distance: 5.022582 - Hydrophobic, 58 - C GLU 484 OE1 VS E ASN 32 ND2 Distance: 4.543303 - Hydrogen Bonds, 59 - C GLU 484 CB VS E THR 52 CG2 Distance: 3.787390 - Hydrophobic, 60 - C GLU 484 CG VS E THR 52 CG2 Distance: 4.456390 - Hydrophobic, 61 - C GLU 484 OE2 VS E THR 52 OG1 Distance: 4.200369 - Hydrogen Bonds, 62 - C GLU 484 OE1 VS E ARG 54 NE Distance: 6.051941 - Attractive, 63 - C GLU 484 OE1 VS E ARG 54 CZ Distance: 6.144800 - Attractive, 64 - C GLU 484 OE1 VS E ARG 54 NH2 Distance: 5.642296 - Attractive, 65 - C GLU 484 OE2 VS E ARG 54 NE Distance: 4.579077 - Attractive, Hydrogen Bonds, 66 - C GLU 484 OE2 VS E ARG 54 CZ Distance: 4.969087 - Attractive, 67 - C GLU 484 OE2 VS E ARG 54 NH1 Distance: 6.124663 - Attractive, 68 - C GLU 484 OE2 VS E ARG 54 NH2 Distance: 4.566778 - Attractive, Hydrogen Bonds, 69 - C GLU 484 CB VS E ILE 57 CB Distance: 5.287714 - Hydrophobic, 70 - C GLU 484 CB VS E ILE 57 CG2 Distance: 5.102020 - Hydrophobic, 71 - C GLU 484 CB VS E ILE 57 CD1 Distance: 4.574595 - Hydrophobic, 72 - C GLU 484 CG VS E ILE 57 CD1 Distance: 5.146349 - Hydrophobic, 73 - C GLY 485 O VS E TYR 59 OH Distance: 4.164947 - Hydrogen Bonds, 74 - C PHE 486 CG VS E LEU 47 CD2 Distance: 5.155622 - Hydrophobic, 75 - C PHE 486 CD2 VS E LEU 47 CB Distance: 5.039512 - Hydrophobic, 76 - C PHE 486 CD2 VS E LEU 47 CG Distance: 4.812017 - Hydrophobic, 77 - C PHE 486 CD2 VS E LEU 47 CD2 Distance: 4.004829 - Hydrophobic, 78 - C PHE 486 CE2 VS E LEU 47 CB Distance: 4.359744 - Hydrophobic, 79 - C PHE 486 CE2 VS E LEU 47 CG Distance: 4.147846 - Hydrophobic, 80 - C PHE 486 CE2 VS E LEU 47 CD2 Distance: 3.758009 - Hydrophobic, 81 - C PHE 486 CZ VS E LEU 47 CB Distance: 5.278706 - Hydrophobic, 82 - C PHE 486 CZ VS E LEU 47 CG Distance: 4.942600 - Hydrophobic, 83 - C PHE 486 CZ VS E LEU 47 CD2 Distance: 4.749902 - Hydrophobic, 84 - C PHE 486 N VS E TYR 59 OH Distance: 4.611917 - Hydrogen Bonds, 85 - C PHE 486 CB VS E TYR 59 CD1 Distance: 4.676953 - Hydrophobic, 86 - C PHE 486 CB VS E TYR 59 CE1 Distance: 4.521171 - Hydrophobic, 87 - C PHE 486 CG VS E TYR 59 CG Distance: 4.934569 - Hydrophobic, 88 - C PHE 486 CG VS E TYR 59 CG Distance: 4.637361 - Aromatic Stacking, 89 - C PHE 486 CG VS E TYR 59 CD1 Distance: 3.870979 - Hydrophobic, 90 - C PHE 486 CG VS E TYR 59 CE1 Distance: 3.809081 - Hydrophobic, 91 - C PHE 486 CD1 VS E TYR 59 CB Distance: 4.756041 - Hydrophobic, 92 - C PHE 486 CD1 VS E TYR 59 CG Distance: 4.519280 - Hydrophobic, 93 - C PHE 486 CD1 VS E TYR 59 CD1 Distance: 3.574266 - Hydrophobic, 94 - C PHE 486 CD1 VS E TYR 59 CE1 Distance: 3.974322 - Hydrophobic, 95 - C PHE 486 CD2 VS E TYR 59 CG Distance: 5.351593 - Hydrophobic, 96 - C PHE 486 CD2 VS E TYR 59 CD1 Distance: 4.106729 - Hydrophobic, 97 - C PHE 486 CD2 VS E TYR 59 CE1 Distance: 3.714351 - Hydrophobic, 98 - C PHE 486 CE1 VS E TYR 59 CB Distance: 4.696656 - Hydrophobic, 99 - C PHE 486 CE1 VS E TYR 59 CG Distance: 4.565627 - Hydrophobic, 100 - C PHE 486 CE1 VS E TYR 59 CD1 Distance: 3.539070 - Hydrophobic, 101 - C PHE 486 CE1 VS E TYR 59 CE1 Distance: 4.050893 - Hydrophobic, 102 - C PHE 486 CE2 VS E TYR 59 CG Distance: 5.388021 - Hydrophobic, 103 - C PHE 486 CE2 VS E TYR 59 CD1 Distance: 4.074707 - Hydrophobic, 104 - C PHE 486 CE2 VS E TYR 59 CE1 Distance: 3.796989 - Hydrophobic, 105 - C PHE 486 CZ VS E TYR 59 CB Distance: 5.403106 - Hydrophobic, 106 - C PHE 486 CZ VS E TYR 59 CG Distance: 5.010991 - Hydrophobic, 107 - C PHE 486 CZ VS E TYR 59 CD1 Distance: 3.796112 - Hydrophobic, 108 - C PHE 486 CZ VS E TYR 59 CE1 Distance: 3.958187 - Hydrophobic, 109 - C PHE 486 CE1 VS E ALA 61 CB Distance: 4.939467 - Hydrophobic, 110 - C PHE 486 CE2 VS E ALA 61 CB Distance: 4.935586 - Hydrophobic, 111 - C PHE 486 CZ VS E ALA 61 CB Distance: 4.172810 - Hydrophobic, 112 - C TYR 489 CD2 VS E ALA 33 CB Distance: 5.267562 - Hydrophobic, 113 - C TYR 489 CE2 VS E ALA 33 CB Distance: 5.491213 - Hydrophobic, 114 - C TYR 489 CD2 VS E ASP 99 CB Distance: 4.516255 - Hydrophobic, 115 - C TYR 489 CE2 VS E ASP 99 CB Distance: 3.731222 - Hydrophobic, 116 - C TYR 489 OH VS E ASP 99 O Distance: 2.867997 - Hydrogen Bonds, 117 - C TYR 489 CB VS E PRO 100 CB Distance: 5.321983 - Hydrophobic, 118 - C TYR 489 CB VS E PRO 100 CG Distance: 5.399307 - Hydrophobic, 119 - C TYR 489 CG VS E PRO 100 CB Distance: 4.440821 - Hydrophobic, 120 - C TYR 489 CG VS E PRO 100 CG Distance: 4.754595 - Hydrophobic, 121 - C TYR 489 CD1 VS E PRO 100 CB Distance: 4.667563 - Hydrophobic, 122 - C TYR 489 CD1 VS E PRO 100 CG Distance: 5.370768 - Hydrophobic, 123 - C TYR 489 CD2 VS E PRO 100 CB Distance: 3.944382 - Hydrophobic, 124 - C TYR 489 CD2 VS E PRO 100 CG Distance: 4.024462 - Hydrophobic, 125 - C TYR 489 CE1 VS E PRO 100 CB Distance: 4.412018 - Hydrophobic, 126 - C TYR 489 CE1 VS E PRO 100 CG Distance: 5.324888 - Hydrophobic, 127 - C TYR 489 CE2 VS E PRO 100 CB Distance: 3.646633 - Hydrophobic, 128 - C TYR 489 CE2 VS E PRO 100 CG Distance: 3.973859 - Hydrophobic, 129 - C PHE 490 O VS E ASN 32 ND2 Distance: 2.939004 - Hydrogen Bonds, 130 - C PHE 490 CB VS E ASN 32 CB Distance: 4.440991 - Hydrophobic, 131 - C PHE 490 CG VS E ASN 32 CB Distance: 5.262214 - Hydrophobic, 132 - C PHE 490 CD2 VS E ASN 32 CB Distance: 5.012852 - Hydrophobic, 133 - C LEU 492 O VS E ASN 32 N Distance: 4.704805 - Hydrogen Bonds, 134 - C GLN 493 CB VS E ARG 31 CB Distance: 5.423365 - Hydrophobic, 135 - C GLN 493 CB VS E ARG 31 CG Distance: 5.398275 - Hydrophobic, 136 - C GLN 493 CG VS E ARG 31 CB Distance: 5.483302 - Hydrophobic, 137 - C GLN 493 OE1 VS E ARG 31 N Distance: 4.531400 - Hydrogen Bonds, 138 - C GLN 493 OE1 VS E ARG 31 NE Distance: 3.486343 - Hydrogen Bonds, 139 - C GLN 493 CG VS E ASN 32 CB Distance: 5.468234 - Hydrophobic, 140 - C GLN 493 OE1 VS E ASN 32 N Distance: 2.825559 - Hydrogen Bonds, 141 - C GLN 493 OE1 VS E ASN 32 ND2 Distance: 3.993969 - Hydrogen Bonds, 142 - C GLN 493 NE2 VS E ASN 32 OD1 Distance: 4.253561 - Hydrogen Bonds, 143 - C SER 494 N VS E GLY 30 O Distance: 2.962875 - Hydrogen Bonds, 144 - C SER 494 OG VS E GLY 30 O Distance: 3.928322 - Hydrogen Bonds, 145 - C SER 494 O VS E ARG 31 N Distance: 4.730024 - Hydrogen Bonds, 146 - C SER 494 OG VS E ARG 53 NE Distance: 4.324382 - Hydrogen Bonds, 147 - C TYR 495 O VS E TYR 27 N Distance: 3.461290 - Hydrogen Bonds, 148 - C TYR 495 CB VS E TYR 27 CD1 Distance: 5.454957 - Hydrophobic, 149 - C TYR 495 CD2 VS E TYR 27 CD1 Distance: 4.833948 - Hydrophobic, 150 - C TYR 495 CD2 VS E TYR 27 CE1 Distance: 4.649279 - Hydrophobic, 151 - C TYR 495 CE2 VS E TYR 27 CE1 Distance: 5.112992 - Hydrophobic, 152 - C GLY 496 N VS E GLY 26 O Distance: 4.417576 - Hydrogen Bonds, 153 - C GLY 496 O VS E GLY 26 N Distance: 4.261540 - Hydrogen Bonds, 154 - C GLY 496 O VS E TYR 27 N Distance: 4.076768 - Hydrogen Bonds, 155 - C GLN 498 OE1 VS E GLY 26 N Distance: 2.869667 - Hydrogen Bonds, 156 - C GLN 498 OE1 VS E TYR 27 N Distance: 4.879255 - Hydrogen Bonds, 157 - C TYR 505 CE1 VS E GLN 3 CG Distance: 5.467069 - Hydrophobic, 158 - C TYR 505 CE2 VS E GLN 3 CG Distance: 5.212927 - Hydrophobic, 159 - C TYR 505 OH VS E GLN 3 NE2 Distance: 4.466289 - Hydrogen Bonds, 160 - C TYR 505 CG VS E TYR 27 CB Distance: 5.460825 - Hydrophobic, 161 - C TYR 505 CG VS E TYR 27 CG Distance: 5.365797 - Hydrophobic, 162 - C TYR 505 CG VS E TYR 27 CG Distance: 5.076092 - Aromatic Stacking, 163 - C TYR 505 CG VS E TYR 27 CD1 Distance: 5.342739 - Hydrophobic, 164 - C TYR 505 CD2 VS E TYR 27 CB Distance: 4.263894 - Hydrophobic, 165 - C TYR 505 CD2 VS E TYR 27 CG Distance: 4.018169 - Hydrophobic, 166 - C TYR 505 CD2 VS E TYR 27 CD1 Distance: 4.036636 - Hydrophobic, 167 - C TYR 505 CD2 VS E TYR 27 CD2 Distance: 4.454210 - Hydrophobic, 168 - C TYR 505 CD2 VS E TYR 27 CE1 Distance: 4.487267 - Hydrophobic, 169 - C TYR 505 CD2 VS E TYR 27 CE2 Distance: 4.861860 - Hydrophobic, 170 - C TYR 505 CE2 VS E TYR 27 CB Distance: 4.355964 - Hydrophobic, 171 - C TYR 505 CE2 VS E TYR 27 CG Distance: 3.807752 - Hydrophobic, 172 - C TYR 505 CE2 VS E TYR 27 CD1 Distance: 4.012433 - Hydrophobic, 173 - C TYR 505 CE2 VS E TYR 27 CD2 Distance: 3.814369 - Hydrophobic, 174 - C TYR 505 CE2 VS E TYR 27 CE1 Distance: 4.212925 - Hydrophobic, 175 - C TYR 505 CE2 VS E TYR 27 CE2 Distance: 4.018231 - Hydrophobic,