VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - A ARG 403 CB VS B TYR 27 CE1 Distance: 5.485551 - Hydrophobic, 1 - A ARG 403 CG VS B TYR 27 CD1 Distance: 5.417095 - Hydrophobic, 2 - A ARG 403 CG VS B TYR 27 CE1 Distance: 5.112080 - Hydrophobic, 3 - A ARG 403 NE VS B TYR 27 OH Distance: 3.902431 - Hydrogen Bonds, 4 - A ARG 403 NH2 VS B TYR 27 OH Distance: 3.812494 - Hydrogen Bonds, 5 - A LYS 417 NZ VS B ALA 104 O Distance: 3.897458 - Hydrogen Bonds, 6 - A LYS 417 CG VS B TYR 105 CD1 Distance: 5.477833 - Hydrophobic, 7 - A LYS 417 CD VS B TYR 105 CD1 Distance: 4.928565 - Hydrophobic, 8 - A LYS 417 CD VS B TYR 105 CE1 Distance: 5.272406 - Hydrophobic, 9 - A GLY 446 O VS B ASN 77 ND2 Distance: 3.081256 - Hydrogen Bonds, 10 - A TYR 449 OH VS B GLY 26 N Distance: 4.302898 - Hydrogen Bonds, 11 - A TYR 449 OH VS B GLY 26 O Distance: 4.385628 - Hydrogen Bonds, 12 - A TYR 449 CG VS B PHE 29 CG Distance: 6.693825 - Aromatic Stacking, 13 - A TYR 449 CE1 VS B PHE 29 CD1 Distance: 5.392098 - Hydrophobic, 14 - A TYR 449 CE2 VS B PHE 29 CB Distance: 4.716542 - Hydrophobic, 15 - A TYR 449 CE2 VS B PHE 29 CG Distance: 5.178389 - Hydrophobic, 16 - A TYR 449 CE2 VS B PHE 29 CD1 Distance: 4.604289 - Hydrophobic, 17 - A TYR 449 OH VS B ASN 77 OD1 Distance: 3.269489 - Hydrogen Bonds, 18 - A TYR 449 OH VS B ASN 77 ND2 Distance: 3.390332 - Hydrogen Bonds, 19 - A TYR 453 CG VS B TYR 27 CD1 Distance: 6.768934 - Aromatic Stacking, 20 - A TYR 453 CE2 VS B TYR 27 CE1 Distance: 5.017852 - Hydrophobic, 21 - A TYR 453 OH VS B TYR 27 O Distance: 4.779374 - Hydrogen Bonds, 22 - A TYR 453 OH VS B TYR 27 OH Distance: 4.056712 - Hydrogen Bonds, 23 - A TYR 453 OH VS B ARG 31 NE Distance: 4.793790 - Hydrogen Bonds, 24 - A LEU 455 CD2 VS B PRO 100 CG Distance: 5.155968 - Hydrophobic, 25 - A LEU 455 CB VS B TYR 105 CD1 Distance: 5.078350 - Hydrophobic, 26 - A LEU 455 CB VS B TYR 105 CE1 Distance: 5.153889 - Hydrophobic, 27 - A LEU 455 CG VS B TYR 105 CB Distance: 4.591850 - Hydrophobic, 28 - A LEU 455 CG VS B TYR 105 CG Distance: 4.136557 - Hydrophobic, 29 - A LEU 455 CG VS B TYR 105 CD1 Distance: 3.616200 - Hydrophobic, 30 - A LEU 455 CG VS B TYR 105 CD2 Distance: 4.800607 - Hydrophobic, 31 - A LEU 455 CG VS B TYR 105 CE1 Distance: 3.885401 - Hydrophobic, 32 - A LEU 455 CG VS B TYR 105 CE2 Distance: 5.018307 - Hydrophobic, 33 - A LEU 455 CD1 VS B TYR 105 CB Distance: 4.134572 - Hydrophobic, 34 - A LEU 455 CD1 VS B TYR 105 CG Distance: 4.093662 - Hydrophobic, 35 - A LEU 455 CD1 VS B TYR 105 CD1 Distance: 3.584064 - Hydrophobic, 36 - A LEU 455 CD1 VS B TYR 105 CD2 Distance: 5.095754 - Hydrophobic, 37 - A LEU 455 CD1 VS B TYR 105 CE1 Distance: 4.264815 - Hydrophobic, 38 - A LEU 455 CD2 VS B TYR 105 CB Distance: 4.262133 - Hydrophobic, 39 - A LEU 455 CD2 VS B TYR 105 CG Distance: 3.891421 - Hydrophobic, 40 - A LEU 455 CD2 VS B TYR 105 CD1 Distance: 3.856849 - Hydrophobic, 41 - A LEU 455 CD2 VS B TYR 105 CD2 Distance: 4.252287 - Hydrophobic, 42 - A LEU 455 CD2 VS B TYR 105 CE1 Distance: 4.212363 - Hydrophobic, 43 - A LEU 455 CD2 VS B TYR 105 CE2 Distance: 4.584964 - Hydrophobic, 44 - A PHE 456 CD2 VS B PRO 100 CB Distance: 5.475811 - Hydrophobic, 45 - A PHE 456 CE2 VS B PRO 100 CB Distance: 4.725216 - Hydrophobic, 46 - A PHE 456 CE2 VS B PRO 100 CG Distance: 4.748507 - Hydrophobic, 47 - A PHE 456 CZ VS B PRO 100 CB Distance: 5.169284 - Hydrophobic, 48 - A PHE 456 CZ VS B PRO 100 CG Distance: 5.194071 - Hydrophobic, 49 - A PHE 456 CB VS B TYR 105 CE1 Distance: 4.856675 - Hydrophobic, 50 - A PHE 456 CG VS B TYR 105 CG Distance: 6.219715 - Aromatic Stacking, 51 - A PHE 456 CG VS B TYR 105 CE1 Distance: 5.156041 - Hydrophobic, 52 - A PHE 456 CD2 VS B TYR 105 CD1 Distance: 5.297947 - Hydrophobic, 53 - A PHE 456 CD2 VS B TYR 105 CE1 Distance: 4.464217 - Hydrophobic, 54 - A PHE 456 CD2 VS B TYR 105 CE2 Distance: 5.146301 - Hydrophobic, 55 - A PHE 456 CE2 VS B TYR 105 CE1 Distance: 5.241609 - Hydrophobic, 56 - A PHE 456 CE2 VS B TYR 105 CE2 Distance: 5.395054 - Hydrophobic, 57 - A VAL 483 CG1 VS B ILE 57 CG2 Distance: 4.919692 - Hydrophobic, 58 - A VAL 483 CG1 VS B ILE 57 CD1 Distance: 4.751404 - Hydrophobic, 59 - A GLU 484 OE1 VS B ASN 32 ND2 Distance: 4.562781 - Hydrogen Bonds, 60 - A GLU 484 CB VS B THR 52 CG2 Distance: 3.731545 - Hydrophobic, 61 - A GLU 484 CG VS B THR 52 CG2 Distance: 4.390127 - Hydrophobic, 62 - A GLU 484 OE2 VS B THR 52 OG1 Distance: 4.007543 - Hydrogen Bonds, 63 - A GLU 484 OE1 VS B ARG 54 NE Distance: 6.106450 - Attractive, 64 - A GLU 484 OE1 VS B ARG 54 CZ Distance: 6.100864 - Attractive, 65 - A GLU 484 OE1 VS B ARG 54 NH2 Distance: 5.470822 - Attractive, 66 - A GLU 484 OE2 VS B ARG 54 NE Distance: 5.007651 - Attractive, 67 - A GLU 484 OE2 VS B ARG 54 CZ Distance: 5.360522 - Attractive, 68 - A GLU 484 OE2 VS B ARG 54 NH1 Distance: 6.529690 - Attractive, 69 - A GLU 484 OE2 VS B ARG 54 NH2 Distance: 4.850019 - Attractive, Hydrogen Bonds, 70 - A GLU 484 CB VS B ILE 57 CB Distance: 5.177103 - Hydrophobic, 71 - A GLU 484 CB VS B ILE 57 CG1 Distance: 5.439969 - Hydrophobic, 72 - A GLU 484 CB VS B ILE 57 CG2 Distance: 5.010332 - Hydrophobic, 73 - A GLU 484 CB VS B ILE 57 CD1 Distance: 4.436093 - Hydrophobic, 74 - A GLU 484 CG VS B ILE 57 CD1 Distance: 5.032431 - Hydrophobic, 75 - A GLY 485 O VS B TYR 59 OH Distance: 4.190615 - Hydrogen Bonds, 76 - A PHE 486 CG VS B LEU 47 CD2 Distance: 5.121245 - Hydrophobic, 77 - A PHE 486 CD2 VS B LEU 47 CB Distance: 4.975392 - Hydrophobic, 78 - A PHE 486 CD2 VS B LEU 47 CG Distance: 4.735097 - Hydrophobic, 79 - A PHE 486 CD2 VS B LEU 47 CD2 Distance: 3.968413 - Hydrophobic, 80 - A PHE 486 CE2 VS B LEU 47 CB Distance: 4.295964 - Hydrophobic, 81 - A PHE 486 CE2 VS B LEU 47 CG Distance: 4.064023 - Hydrophobic, 82 - A PHE 486 CE2 VS B LEU 47 CD2 Distance: 3.727386 - Hydrophobic, 83 - A PHE 486 CZ VS B LEU 47 CB Distance: 5.221796 - Hydrophobic, 84 - A PHE 486 CZ VS B LEU 47 CG Distance: 4.862849 - Hydrophobic, 85 - A PHE 486 CZ VS B LEU 47 CD2 Distance: 4.725582 - Hydrophobic, 86 - A PHE 486 N VS B TYR 59 OH Distance: 4.666989 - Hydrogen Bonds, 87 - A PHE 486 CB VS B TYR 59 CD1 Distance: 4.723950 - Hydrophobic, 88 - A PHE 486 CB VS B TYR 59 CE1 Distance: 4.571468 - Hydrophobic, 89 - A PHE 486 CG VS B TYR 59 CG Distance: 5.010844 - Hydrophobic, 90 - A PHE 486 CG VS B TYR 59 CG Distance: 4.685611 - Aromatic Stacking, 91 - A PHE 486 CG VS B TYR 59 CD1 Distance: 3.921887 - Hydrophobic, 92 - A PHE 486 CG VS B TYR 59 CE1 Distance: 3.854898 - Hydrophobic, 93 - A PHE 486 CD1 VS B TYR 59 CB Distance: 4.822685 - Hydrophobic, 94 - A PHE 486 CD1 VS B TYR 59 CG Distance: 4.576711 - Hydrophobic, 95 - A PHE 486 CD1 VS B TYR 59 CD1 Distance: 3.601585 - Hydrophobic, 96 - A PHE 486 CD1 VS B TYR 59 CE1 Distance: 3.991083 - Hydrophobic, 97 - A PHE 486 CD2 VS B TYR 59 CG Distance: 5.423291 - Hydrophobic, 98 - A PHE 486 CD2 VS B TYR 59 CD1 Distance: 4.164495 - Hydrophobic, 99 - A PHE 486 CD2 VS B TYR 59 CE1 Distance: 3.766602 - Hydrophobic, 100 - A PHE 486 CE1 VS B TYR 59 CB Distance: 4.747125 - Hydrophobic, 101 - A PHE 486 CE1 VS B TYR 59 CG Distance: 4.599658 - Hydrophobic, 102 - A PHE 486 CE1 VS B TYR 59 CD1 Distance: 3.551595 - Hydrophobic, 103 - A PHE 486 CE1 VS B TYR 59 CE1 Distance: 4.048020 - Hydrophobic, 104 - A PHE 486 CE2 VS B TYR 59 CG Distance: 5.440140 - Hydrophobic, 105 - A PHE 486 CE2 VS B TYR 59 CD1 Distance: 4.119814 - Hydrophobic, 106 - A PHE 486 CE2 VS B TYR 59 CE1 Distance: 3.827767 - Hydrophobic, 107 - A PHE 486 CZ VS B TYR 59 CB Distance: 5.451991 - Hydrophobic, 108 - A PHE 486 CZ VS B TYR 59 CG Distance: 5.044725 - Hydrophobic, 109 - A PHE 486 CZ VS B TYR 59 CD1 Distance: 3.819843 - Hydrophobic, 110 - A PHE 486 CZ VS B TYR 59 CE1 Distance: 3.962579 - Hydrophobic, 111 - A PHE 486 CE1 VS B ALA 61 CB Distance: 4.883884 - Hydrophobic, 112 - A PHE 486 CE2 VS B ALA 61 CB Distance: 4.908882 - Hydrophobic, 113 - A PHE 486 CZ VS B ALA 61 CB Distance: 4.137161 - Hydrophobic, 114 - A TYR 489 CD2 VS B ALA 33 CB Distance: 5.301713 - Hydrophobic, 115 - A TYR 489 CD2 VS B ASP 99 CB Distance: 4.501715 - Hydrophobic, 116 - A TYR 489 CE2 VS B ASP 99 CB Distance: 3.726047 - Hydrophobic, 117 - A TYR 489 OH VS B ASP 99 O Distance: 2.865253 - Hydrogen Bonds, 118 - A TYR 489 CB VS B PRO 100 CB Distance: 5.269646 - Hydrophobic, 119 - A TYR 489 CB VS B PRO 100 CG Distance: 5.359881 - Hydrophobic, 120 - A TYR 489 CG VS B PRO 100 CB Distance: 4.400749 - Hydrophobic, 121 - A TYR 489 CG VS B PRO 100 CG Distance: 4.729906 - Hydrophobic, 122 - A TYR 489 CD1 VS B PRO 100 CB Distance: 4.640723 - Hydrophobic, 123 - A TYR 489 CD1 VS B PRO 100 CG Distance: 5.358638 - Hydrophobic, 124 - A TYR 489 CD2 VS B PRO 100 CB Distance: 3.907200 - Hydrophobic, 125 - A TYR 489 CD2 VS B PRO 100 CG Distance: 4.002664 - Hydrophobic, 126 - A TYR 489 CE1 VS B PRO 100 CB Distance: 4.401318 - Hydrophobic, 127 - A TYR 489 CE1 VS B PRO 100 CG Distance: 5.326468 - Hydrophobic, 128 - A TYR 489 CE2 VS B PRO 100 CB Distance: 3.628209 - Hydrophobic, 129 - A TYR 489 CE2 VS B PRO 100 CG Distance: 3.969708 - Hydrophobic, 130 - A PHE 490 O VS B ASN 32 ND2 Distance: 2.934149 - Hydrogen Bonds, 131 - A PHE 490 CB VS B ASN 32 CB Distance: 4.488141 - Hydrophobic, 132 - A PHE 490 CG VS B ASN 32 CB Distance: 5.387288 - Hydrophobic, 133 - A PHE 490 CD2 VS B ASN 32 CB Distance: 5.257666 - Hydrophobic, 134 - A LEU 492 O VS B ASN 32 N Distance: 4.752151 - Hydrogen Bonds, 135 - A GLN 493 CB VS B ARG 31 CB Distance: 5.332108 - Hydrophobic, 136 - A GLN 493 CB VS B ARG 31 CG Distance: 5.333603 - Hydrophobic, 137 - A GLN 493 CG VS B ARG 31 CB Distance: 5.390508 - Hydrophobic, 138 - A GLN 493 CG VS B ARG 31 CG Distance: 5.444984 - Hydrophobic, 139 - A GLN 493 OE1 VS B ARG 31 N Distance: 4.662842 - Hydrogen Bonds, 140 - A GLN 493 OE1 VS B ARG 31 NE Distance: 3.066488 - Hydrogen Bonds, 141 - A GLN 493 OE1 VS B ARG 31 NH2 Distance: 4.785995 - Hydrogen Bonds, 142 - A GLN 493 CG VS B ASN 32 CB Distance: 5.425127 - Hydrophobic, 143 - A GLN 493 OE1 VS B ASN 32 N Distance: 2.908139 - Hydrogen Bonds, 144 - A GLN 493 OE1 VS B ASN 32 ND2 Distance: 3.951503 - Hydrogen Bonds, 145 - A GLN 493 NE2 VS B ASN 32 OD1 Distance: 4.188979 - Hydrogen Bonds, 146 - A SER 494 N VS B GLY 30 O Distance: 2.936805 - Hydrogen Bonds, 147 - A SER 494 OG VS B GLY 30 O Distance: 3.917259 - Hydrogen Bonds, 148 - A SER 494 O VS B ARG 31 N Distance: 4.698465 - Hydrogen Bonds, 149 - A SER 494 OG VS B ARG 53 NE Distance: 4.315540 - Hydrogen Bonds, 150 - A TYR 495 O VS B TYR 27 N Distance: 3.475442 - Hydrogen Bonds, 151 - A TYR 495 CB VS B TYR 27 CD1 Distance: 5.462446 - Hydrophobic, 152 - A TYR 495 CD2 VS B TYR 27 CD1 Distance: 4.844074 - Hydrophobic, 153 - A TYR 495 CD2 VS B TYR 27 CE1 Distance: 4.652030 - Hydrophobic, 154 - A TYR 495 CE2 VS B TYR 27 CE1 Distance: 5.118136 - Hydrophobic, 155 - A GLY 496 N VS B GLY 26 O Distance: 4.416522 - Hydrogen Bonds, 156 - A GLY 496 O VS B GLY 26 N Distance: 4.264069 - Hydrogen Bonds, 157 - A GLY 496 O VS B TYR 27 N Distance: 4.064489 - Hydrogen Bonds, 158 - A GLN 498 OE1 VS B GLY 26 N Distance: 2.863256 - Hydrogen Bonds, 159 - A GLN 498 OE1 VS B TYR 27 N Distance: 4.868635 - Hydrogen Bonds, 160 - A TYR 505 CE1 VS B GLN 3 CG Distance: 5.458775 - Hydrophobic, 161 - A TYR 505 CE2 VS B GLN 3 CG Distance: 5.195531 - Hydrophobic, 162 - A TYR 505 OH VS B GLN 3 NE2 Distance: 4.451972 - Hydrogen Bonds, 163 - A TYR 505 CG VS B TYR 27 CB Distance: 5.453898 - Hydrophobic, 164 - A TYR 505 CG VS B TYR 27 CG Distance: 5.357681 - Hydrophobic, 165 - A TYR 505 CG VS B TYR 27 CG Distance: 5.071480 - Aromatic Stacking, 166 - A TYR 505 CG VS B TYR 27 CD1 Distance: 5.330916 - Hydrophobic, 167 - A TYR 505 CD2 VS B TYR 27 CB Distance: 4.260650 - Hydrophobic, 168 - A TYR 505 CD2 VS B TYR 27 CG Distance: 4.012070 - Hydrophobic, 169 - A TYR 505 CD2 VS B TYR 27 CD1 Distance: 4.026794 - Hydrophobic, 170 - A TYR 505 CD2 VS B TYR 27 CD2 Distance: 4.449419 - Hydrophobic, 171 - A TYR 505 CD2 VS B TYR 27 CE1 Distance: 4.477986 - Hydrophobic, 172 - A TYR 505 CD2 VS B TYR 27 CE2 Distance: 4.857243 - Hydrophobic, 173 - A TYR 505 CE2 VS B TYR 27 CB Distance: 4.356852 - Hydrophobic, 174 - A TYR 505 CE2 VS B TYR 27 CG Distance: 3.804874 - Hydrophobic, 175 - A TYR 505 CE2 VS B TYR 27 CD1 Distance: 4.006059 - Hydrophobic, 176 - A TYR 505 CE2 VS B TYR 27 CD2 Distance: 3.812573 - Hydrophobic, 177 - A TYR 505 CE2 VS B TYR 27 CE1 Distance: 4.206001 - Hydrophobic, 178 - A TYR 505 CE2 VS B TYR 27 CE2 Distance: 4.015928 - Hydrophobic,