VIRAL PROTEIN CRYO-EM STRUCTURE OF THE SARS-COV-2 SPIKE PROTEIN BOUND TO NEUTRALIZING SYBODIES (SB23) 2-UP CONFORMATION: 0 - A ARG 346 NE VS D GLU 32 OE2 Distance: 6.551619 - Attractive, 1 - A ARG 346 CZ VS D GLU 32 OE2 Distance: 6.943556 - Attractive, 2 - A ARG 346 NH1 VS D GLU 32 OE2 Distance: 6.800545 - Attractive, 3 - A LYS 444 NZ VS D HIS 35 ND1 Distance: 6.145058 - Repulsive, 4 - A LYS 444 NZ VS D TYR 37 OH Distance: 3.247071 - Hydrogen Bonds, 5 - A LYS 444 NZ VS D ARG 45 NE Distance: 5.234297 - Repulsive, 6 - A LYS 444 NZ VS D ARG 45 CZ Distance: 5.217135 - Repulsive, 7 - A LYS 444 NZ VS D ARG 45 NH1 Distance: 6.344066 - Repulsive, 8 - A LYS 444 NZ VS D ARG 45 NH2 Distance: 4.395470 - Repulsive, 9 - A LYS 444 CB VS D TRP 103 CZ2 Distance: 4.779727 - Hydrophobic, 10 - A LYS 444 CB VS D TRP 103 CH2 Distance: 5.232450 - Hydrophobic, 11 - A LYS 444 CG VS D TRP 103 CG Distance: 5.253586 - Hydrophobic, 12 - A LYS 444 CG VS D TRP 103 CD2 Distance: 4.818529 - Hydrophobic, 13 - A LYS 444 CG VS D TRP 103 CE3 Distance: 5.120211 - Hydrophobic, 14 - A LYS 444 CG VS D TRP 103 CZ2 Distance: 4.681142 - Hydrophobic, 15 - A LYS 444 CG VS D TRP 103 CZ3 Distance: 5.183506 - Hydrophobic, 16 - A LYS 444 CG VS D TRP 103 CH2 Distance: 4.973795 - Hydrophobic, 17 - A LYS 444 CD VS D TRP 103 CD2 Distance: 5.094902 - Hydrophobic, 18 - A LYS 444 CD VS D TRP 103 CE3 Distance: 4.973263 - Hydrophobic, 19 - A LYS 444 CD VS D TRP 103 CZ2 Distance: 4.955446 - Hydrophobic, 20 - A LYS 444 CD VS D TRP 103 CZ3 Distance: 4.829220 - Hydrophobic, 21 - A LYS 444 CD VS D TRP 103 CH2 Distance: 4.822519 - Hydrophobic, 22 - A LYS 444 NZ VS D GLU 105 OE1 Distance: 5.755280 - Attractive, 23 - A LYS 444 NZ VS D GLU 105 OE2 Distance: 6.533763 - Attractive, 24 - A VAL 445 CB VS D GLU 44 CG Distance: 5.441304 - Hydrophobic, 25 - A VAL 445 O VS D ARG 45 NE Distance: 4.320570 - Hydrogen Bonds, 26 - A VAL 445 O VS D ARG 45 NH2 Distance: 3.652264 - Hydrogen Bonds, 27 - A GLY 446 N VS D ARG 45 O Distance: 4.444779 - Hydrogen Bonds, 28 - A GLY 446 O VS D GLU 46 N Distance: 3.939366 - Hydrogen Bonds, 29 - A GLY 446 O VS D TRP 47 N Distance: 3.986918 - Hydrogen Bonds, 30 - A GLY 447 O VS D TYR 37 OH Distance: 3.865231 - Hydrogen Bonds, 31 - A GLY 447 N VS D ARG 45 O Distance: 4.769999 - Hydrogen Bonds, 32 - A ASN 448 CB VS D TRP 103 CZ2 Distance: 5.320979 - Hydrophobic, 33 - A ASN 448 CB VS D TRP 103 CH2 Distance: 5.421572 - Hydrophobic, 34 - A TYR 449 O VS D HIS 35 NE2 Distance: 4.328293 - Hydrogen Bonds, 35 - A TYR 449 N VS D TYR 37 OH Distance: 4.871426 - Hydrogen Bonds, 36 - A TYR 449 CD1 VS D TYR 37 CE2 Distance: 5.235372 - Hydrophobic, 37 - A TYR 449 CB VS D TRP 47 CB Distance: 5.303661 - Hydrophobic, 38 - A TYR 449 CB VS D TRP 47 CG Distance: 4.613673 - Hydrophobic, 39 - A TYR 449 CB VS D TRP 47 CD2 Distance: 4.468141 - Hydrophobic, 40 - A TYR 449 CB VS D TRP 47 CE3 Distance: 4.960529 - Hydrophobic, 41 - A TYR 449 CB VS D TRP 47 CZ2 Distance: 4.826852 - Hydrophobic, 42 - A TYR 449 CB VS D TRP 47 CZ3 Distance: 5.321823 - Hydrophobic, 43 - A TYR 449 CB VS D TRP 47 CH2 Distance: 5.257361 - Hydrophobic, 44 - A TYR 449 CG VS D TRP 47 CB Distance: 4.554177 - Hydrophobic, 45 - A TYR 449 CG VS D TRP 47 CG Distance: 4.101607 - Hydrophobic, 46 - A TYR 449 CG VS D TRP 47 CG Distance: 4.089314 - Aromatic Stacking, 47 - A TYR 449 CG VS D TRP 47 CD2 Distance: 3.847867 - Hydrophobic, 48 - A TYR 449 CG VS D TRP 47 CE3 Distance: 4.016800 - Hydrophobic, 49 - A TYR 449 CG VS D TRP 47 CZ2 Distance: 4.699791 - Hydrophobic, 50 - A TYR 449 CG VS D TRP 47 CZ3 Distance: 4.496607 - Hydrophobic, 51 - A TYR 449 CG VS D TRP 47 CH2 Distance: 4.810705 - Hydrophobic, 52 - A TYR 449 CD1 VS D TRP 47 CB Distance: 3.736021 - Hydrophobic, 53 - A TYR 449 CD1 VS D TRP 47 CG Distance: 3.735210 - Hydrophobic, 54 - A TYR 449 CD1 VS D TRP 47 CD2 Distance: 3.869444 - Hydrophobic, 55 - A TYR 449 CD1 VS D TRP 47 CE3 Distance: 4.081648 - Hydrophobic, 56 - A TYR 449 CD1 VS D TRP 47 CZ2 Distance: 5.373031 - Hydrophobic, 57 - A TYR 449 CD1 VS D TRP 47 CZ3 Distance: 4.917864 - Hydrophobic, 58 - A TYR 449 CD1 VS D TRP 47 CH2 Distance: 5.494711 - Hydrophobic, 59 - A TYR 449 CD2 VS D TRP 47 CB Distance: 5.155319 - Hydrophobic, 60 - A TYR 449 CD2 VS D TRP 47 CG Distance: 4.637733 - Hydrophobic, 61 - A TYR 449 CD2 VS D TRP 47 CD2 Distance: 3.974147 - Hydrophobic, 62 - A TYR 449 CD2 VS D TRP 47 CE3 Distance: 3.692290 - Hydrophobic, 63 - A TYR 449 CD2 VS D TRP 47 CZ2 Distance: 4.492652 - Hydrophobic, 64 - A TYR 449 CD2 VS D TRP 47 CZ3 Distance: 3.824036 - Hydrophobic, 65 - A TYR 449 CD2 VS D TRP 47 CH2 Distance: 4.226875 - Hydrophobic, 66 - A TYR 449 CE1 VS D TRP 47 CB Distance: 3.631444 - Hydrophobic, 67 - A TYR 449 CE1 VS D TRP 47 CG Distance: 3.982757 - Hydrophobic, 68 - A TYR 449 CE1 VS D TRP 47 CD2 Distance: 4.031763 - Hydrophobic, 69 - A TYR 449 CE1 VS D TRP 47 CE3 Distance: 3.862194 - Hydrophobic, 70 - A TYR 449 CE1 VS D TRP 47 CZ3 Distance: 4.773665 - Hydrophobic, 71 - A TYR 449 CE2 VS D TRP 47 CB Distance: 5.085177 - Hydrophobic, 72 - A TYR 449 CE2 VS D TRP 47 CG Distance: 4.842473 - Hydrophobic, 73 - A TYR 449 CE2 VS D TRP 47 CD2 Distance: 4.132940 - Hydrophobic, 74 - A TYR 449 CE2 VS D TRP 47 CE3 Distance: 3.447030 - Hydrophobic, 75 - A TYR 449 CE2 VS D TRP 47 CZ2 Distance: 5.005249 - Hydrophobic, 76 - A TYR 449 CE2 VS D TRP 47 CZ3 Distance: 3.632145 - Hydrophobic, 77 - A TYR 449 CE2 VS D TRP 47 CH2 Distance: 4.440989 - Hydrophobic, 78 - A TYR 449 CB VS D ALA 50 CB Distance: 5.460292 - Hydrophobic, 79 - A TYR 449 O VS D TYR 52 OH Distance: 2.827279 - Hydrogen Bonds, 80 - A ASN 450 ND2 VS D GLU 32 OE2 Distance: 3.803898 - Hydrogen Bonds, 81 - A ASN 450 N VS D HIS 35 NE2 Distance: 4.471570 - Hydrogen Bonds, 82 - A ASN 450 OD1 VS D HIS 35 ND1 Distance: 4.294972 - Hydrogen Bonds, 83 - A ASN 450 OD1 VS D HIS 35 NE2 Distance: 2.809075 - Hydrogen Bonds, 84 - A ASN 450 ND2 VS D GLN 99 OE1 Distance: 2.297319 - Hydrogen Bonds, 85 - A LEU 452 CB VS D TYR 52 CD2 Distance: 5.252505 - Hydrophobic, 86 - A LEU 452 CB VS D TYR 52 CE2 Distance: 4.531326 - Hydrophobic, 87 - A LEU 452 CG VS D TYR 52 CD2 Distance: 4.945239 - Hydrophobic, 88 - A LEU 452 CG VS D TYR 52 CE2 Distance: 4.213703 - Hydrophobic, 89 - A LEU 452 CD1 VS D TYR 52 CD2 Distance: 5.021522 - Hydrophobic, 90 - A LEU 452 CD1 VS D TYR 52 CE2 Distance: 3.978979 - Hydrophobic, 91 - A LEU 452 CD2 VS D TYR 52 CG Distance: 5.181552 - Hydrophobic, 92 - A LEU 452 CD2 VS D TYR 52 CD2 Distance: 3.912334 - Hydrophobic, 93 - A LEU 452 CD2 VS D TYR 52 CE2 Distance: 3.542336 - Hydrophobic, 94 - A LEU 452 CD1 VS D LEU 59 CD1 Distance: 4.641134 - Hydrophobic, 95 - A THR 470 OG1 VS D TRP 57 NE1 Distance: 4.030069 - Hydrogen Bonds, 96 - A THR 470 CG2 VS D TRP 57 CD2 Distance: 5.473504 - Hydrophobic, 97 - A THR 470 CG2 VS D TRP 57 CE3 Distance: 5.001253 - Hydrophobic, 98 - A THR 470 CG2 VS D TRP 57 CZ2 Distance: 4.905156 - Hydrophobic, 99 - A THR 470 CG2 VS D TRP 57 CZ3 Distance: 4.425594 - Hydrophobic, 100 - A THR 470 CG2 VS D TRP 57 CH2 Distance: 4.376268 - Hydrophobic, 101 - A GLU 484 OE2 VS D LYS 65 NZ Distance: 6.605078 - Attractive, 102 - A PHE 490 CE1 VS D TRP 57 CB Distance: 5.071960 - Hydrophobic, 103 - A PHE 490 CZ VS D TRP 57 CB Distance: 5.104252 - Hydrophobic, 104 - A PHE 490 CG VS D LEU 59 CB Distance: 5.486541 - Hydrophobic, 105 - A PHE 490 CD1 VS D LEU 59 CB Distance: 5.403765 - Hydrophobic, 106 - A PHE 490 CD2 VS D LEU 59 CB Distance: 5.076354 - Hydrophobic, 107 - A PHE 490 CD2 VS D LEU 59 CD1 Distance: 5.401537 - Hydrophobic, 108 - A PHE 490 CE1 VS D LEU 59 CB Distance: 4.925659 - Hydrophobic, 109 - A PHE 490 CE2 VS D LEU 59 CB Distance: 4.562137 - Hydrophobic, 110 - A PHE 490 CE2 VS D LEU 59 CG Distance: 5.195659 - Hydrophobic, 111 - A PHE 490 CE2 VS D LEU 59 CD1 Distance: 4.692274 - Hydrophobic, 112 - A PHE 490 CZ VS D LEU 59 CB Distance: 4.479824 - Hydrophobic, 113 - A PHE 490 CZ VS D LEU 59 CG Distance: 5.223536 - Hydrophobic, 114 - A PHE 490 CZ VS D LEU 59 CD1 Distance: 5.070626 - Hydrophobic, 115 - A PHE 490 CZ VS D LEU 59 CD2 Distance: 5.373659 - Hydrophobic, 116 - A LEU 492 CD1 VS D TRP 57 CE3 Distance: 5.374567 - Hydrophobic, 117 - A SER 494 OG VS D TYR 52 OH Distance: 4.625886 - Hydrogen Bonds,