VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH THE S2E12 NEUTRALIZING ANTIBODY FAB FRAGMENT (LOCAL REFINEMENT OF THE RBD AND FAB VARIABLE DOMAINS): 0 - H ALA 33 CB VS B PHE 486 CD1 Distance: 5.129970 - Hydrophobic, 1 - H ALA 33 CB VS B PHE 486 CE1 Distance: 4.855074 - Hydrophobic, 2 - H ALA 33 CB VS B TYR 489 CE2 Distance: 5.140182 - Hydrophobic, 3 - H TRP 50 CE3 VS B PHE 486 CD1 Distance: 4.828875 - Hydrophobic, 4 - H TRP 50 CE3 VS B PHE 486 CE1 Distance: 5.394775 - Hydrophobic, 5 - H TRP 50 CZ2 VS B PHE 486 CB Distance: 5.272299 - Hydrophobic, 6 - H TRP 50 CZ2 VS B PHE 486 CD1 Distance: 5.489054 - Hydrophobic, 7 - H TRP 50 CZ3 VS B PHE 486 CB Distance: 5.089572 - Hydrophobic, 8 - H TRP 50 CZ3 VS B PHE 486 CG Distance: 5.154836 - Hydrophobic, 9 - H TRP 50 CZ3 VS B PHE 486 CD1 Distance: 4.241168 - Hydrophobic, 10 - H TRP 50 CZ3 VS B PHE 486 CE1 Distance: 4.947578 - Hydrophobic, 11 - H TRP 50 CH2 VS B PHE 486 CB Distance: 4.775342 - Hydrophobic, 12 - H TRP 50 CH2 VS B PHE 486 CG Distance: 5.213181 - Hydrophobic, 13 - H TRP 50 CH2 VS B PHE 486 CD1 Distance: 4.620446 - Hydrophobic, 14 - H TRP 50 CZ2 VS B TYR 489 CE2 Distance: 5.378723 - Hydrophobic, 15 - H TRP 50 CZ3 VS B TYR 489 CE2 Distance: 4.451382 - Hydrophobic, 16 - H TRP 50 CH2 VS B TYR 489 CD2 Distance: 5.143011 - Hydrophobic, 17 - H TRP 50 CH2 VS B TYR 489 CE2 Distance: 4.240571 - Hydrophobic, 18 - H VAL 52 CG1 VS B PHE 456 CE1 Distance: 4.973638 - Hydrophobic, 19 - H VAL 52 CG1 VS B PHE 456 CE2 Distance: 5.047910 - Hydrophobic, 20 - H VAL 52 CG1 VS B PHE 456 CZ Distance: 4.231125 - Hydrophobic, 21 - H VAL 52 CB VS B TYR 489 CG Distance: 5.491689 - Hydrophobic, 22 - H VAL 52 CB VS B TYR 489 CD2 Distance: 4.471987 - Hydrophobic, 23 - H VAL 52 CB VS B TYR 489 CE2 Distance: 4.152017 - Hydrophobic, 24 - H VAL 52 CG1 VS B TYR 489 CB Distance: 5.348578 - Hydrophobic, 25 - H VAL 52 CG1 VS B TYR 489 CG Distance: 4.500699 - Hydrophobic, 26 - H VAL 52 CG1 VS B TYR 489 CD1 Distance: 4.981589 - Hydrophobic, 27 - H VAL 52 CG1 VS B TYR 489 CD2 Distance: 3.758976 - Hydrophobic, 28 - H VAL 52 CG1 VS B TYR 489 CE1 Distance: 4.804509 - Hydrophobic, 29 - H VAL 52 CG1 VS B TYR 489 CE2 Distance: 3.526614 - Hydrophobic, 30 - H VAL 52 CG2 VS B TYR 489 CG Distance: 5.235818 - Hydrophobic, 31 - H VAL 52 CG2 VS B TYR 489 CD2 Distance: 3.988886 - Hydrophobic, 32 - H VAL 52 CG2 VS B TYR 489 CE2 Distance: 3.549935 - Hydrophobic, 33 - H ARG 72 NH2 VS B ARG 403 NH2 Distance: 6.971467 - Repulsive, 34 - H ARG 72 NH2 VS B LYS 417 NZ Distance: 6.612381 - Repulsive, 35 - H PRO 99 CB VS B PHE 486 CE1 Distance: 4.616255 - Hydrophobic, 36 - H PRO 99 CB VS B PHE 486 CE2 Distance: 5.030217 - Hydrophobic, 37 - H PRO 99 CB VS B PHE 486 CZ Distance: 4.036686 - Hydrophobic, 38 - H PRO 99 CG VS B PHE 486 CD1 Distance: 5.383219 - Hydrophobic, 39 - H PRO 99 CG VS B PHE 486 CE1 Distance: 4.114933 - Hydrophobic, 40 - H PRO 99 CG VS B PHE 486 CE2 Distance: 5.194684 - Hydrophobic, 41 - H PRO 99 CG VS B PHE 486 CZ Distance: 3.992330 - Hydrophobic, 42 - H GLY 104 O VS B TYR 473 OH Distance: 2.851766 - Hydrogen Bonds, 43 - H SER 105 N VS B ALA 475 O Distance: 4.885350 - Hydrogen Bonds, 44 - H CYS 106 N VS B ALA 475 O Distance: 2.890773 - Hydrogen Bonds, 45 - H CYS 106 CB VS B ALA 475 CB Distance: 4.156877 - Hydrophobic, 46 - H CYS 106 SG VS B ALA 475 O Distance: 4.547293 - Hydrogen Bonds, 47 - H CYS 106 O VS B GLY 476 N Distance: 4.348942 - Hydrogen Bonds, 48 - H CYS 106 O VS B SER 477 N Distance: 4.874996 - Hydrogen Bonds, 49 - H CYS 106 O VS B ASN 487 ND2 Distance: 4.852094 - Hydrogen Bonds, 50 - H SER 107 O VS B ASN 487 ND2 Distance: 2.932747 - Hydrogen Bonds, 51 - H ASP 108 OD1 VS B GLY 476 N Distance: 4.592475 - Hydrogen Bonds, 52 - H ASP 108 OD1 VS B SER 477 N Distance: 2.938168 - Hydrogen Bonds, 53 - H ASP 108 OD2 VS B SER 477 N Distance: 3.635066 - Hydrogen Bonds, 54 - H ASP 108 CB VS B THR 478 CG2 Distance: 5.115005 - Hydrophobic, 55 - H ASP 108 OD1 VS B THR 478 N Distance: 4.092930 - Hydrogen Bonds, 56 - H ASP 108 OD1 VS B THR 478 OG1 Distance: 4.298785 - Hydrogen Bonds, 57 - H ASP 108 OD2 VS B THR 478 N Distance: 4.735712 - Hydrogen Bonds, 58 - H ASP 108 OD1 VS B ASN 487 ND2 Distance: 3.823806 - Hydrogen Bonds, 59 - H PHE 110 CG VS B PHE 486 CG Distance: 4.694884 - Aromatic Stacking, 60 - H PHE 110 CG VS B PHE 486 CE1 Distance: 4.894587 - Hydrophobic, 61 - H PHE 110 CG VS B PHE 486 CZ Distance: 4.800809 - Hydrophobic, 62 - H PHE 110 CD1 VS B PHE 486 CD1 Distance: 5.022217 - Hydrophobic, 63 - H PHE 110 CD1 VS B PHE 486 CD2 Distance: 5.457767 - Hydrophobic, 64 - H PHE 110 CD1 VS B PHE 486 CE1 Distance: 4.391760 - Hydrophobic, 65 - H PHE 110 CD1 VS B PHE 486 CE2 Distance: 4.878649 - Hydrophobic, 66 - H PHE 110 CD1 VS B PHE 486 CZ Distance: 4.306679 - Hydrophobic, 67 - H PHE 110 CD2 VS B PHE 486 CE1 Distance: 4.685127 - Hydrophobic, 68 - H PHE 110 CD2 VS B PHE 486 CZ Distance: 4.876806 - Hydrophobic, 69 - H PHE 110 CE1 VS B PHE 486 CG Distance: 4.579498 - Hydrophobic, 70 - H PHE 110 CE1 VS B PHE 486 CD1 Distance: 3.972349 - Hydrophobic, 71 - H PHE 110 CE1 VS B PHE 486 CD2 Distance: 4.800186 - Hydrophobic, 72 - H PHE 110 CE1 VS B PHE 486 CE1 Distance: 3.592313 - Hydrophobic, 73 - H PHE 110 CE1 VS B PHE 486 CE2 Distance: 4.485857 - Hydrophobic, 74 - H PHE 110 CE1 VS B PHE 486 CZ Distance: 3.879624 - Hydrophobic, 75 - H PHE 110 CE2 VS B PHE 486 CD1 Distance: 4.700329 - Hydrophobic, 76 - H PHE 110 CE2 VS B PHE 486 CE1 Distance: 3.955041 - Hydrophobic, 77 - H PHE 110 CE2 VS B PHE 486 CZ Distance: 4.512489 - Hydrophobic, 78 - H PHE 110 CZ VS B PHE 486 CG Distance: 4.739155 - Hydrophobic, 79 - H PHE 110 CZ VS B PHE 486 CD1 Distance: 3.778773 - Hydrophobic, 80 - H PHE 110 CZ VS B PHE 486 CD2 Distance: 5.219411 - Hydrophobic, 81 - H PHE 110 CZ VS B PHE 486 CE1 Distance: 3.336564 - Hydrophobic, 82 - H PHE 110 CZ VS B PHE 486 CE2 Distance: 4.906312 - Hydrophobic, 83 - H PHE 110 CZ VS B PHE 486 CZ Distance: 4.001052 - Hydrophobic,