VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - C ARG 403 CB VS E TYR 27 CE1 Distance: 5.483062 - Hydrophobic, 1 - C ARG 403 CG VS E TYR 27 CD1 Distance: 5.413950 - Hydrophobic, 2 - C ARG 403 CG VS E TYR 27 CE1 Distance: 5.110329 - Hydrophobic, 3 - C ARG 403 NE VS E TYR 27 OH Distance: 3.893634 - Hydrogen Bonds, 4 - C ARG 403 NH2 VS E TYR 27 OH Distance: 3.792593 - Hydrogen Bonds, 5 - C LYS 417 NZ VS E ALA 104 O Distance: 3.892784 - Hydrogen Bonds, 6 - C LYS 417 CG VS E TYR 105 CD1 Distance: 5.481211 - Hydrophobic, 7 - C LYS 417 CD VS E TYR 105 CD1 Distance: 4.929024 - Hydrophobic, 8 - C LYS 417 CD VS E TYR 105 CE1 Distance: 5.280799 - Hydrophobic, 9 - C GLY 446 O VS E ASN 77 ND2 Distance: 3.080922 - Hydrogen Bonds, 10 - C TYR 449 OH VS E GLY 26 N Distance: 4.297476 - Hydrogen Bonds, 11 - C TYR 449 OH VS E GLY 26 O Distance: 4.397725 - Hydrogen Bonds, 12 - C TYR 449 CG VS E PHE 29 CG Distance: 6.696317 - Aromatic Stacking, 13 - C TYR 449 CE1 VS E PHE 29 CD1 Distance: 5.401290 - Hydrophobic, 14 - C TYR 449 CE2 VS E PHE 29 CB Distance: 4.722953 - Hydrophobic, 15 - C TYR 449 CE2 VS E PHE 29 CG Distance: 5.179925 - Hydrophobic, 16 - C TYR 449 CE2 VS E PHE 29 CD1 Distance: 4.599782 - Hydrophobic, 17 - C TYR 449 OH VS E ASN 77 OD1 Distance: 3.263876 - Hydrogen Bonds, 18 - C TYR 449 OH VS E ASN 77 ND2 Distance: 3.387090 - Hydrogen Bonds, 19 - C TYR 453 CG VS E TYR 27 CD1 Distance: 6.763368 - Aromatic Stacking, 20 - C TYR 453 CE2 VS E TYR 27 CE1 Distance: 5.008781 - Hydrophobic, 21 - C TYR 453 OH VS E TYR 27 O Distance: 4.767358 - Hydrogen Bonds, 22 - C TYR 453 OH VS E TYR 27 OH Distance: 4.069275 - Hydrogen Bonds, 23 - C LEU 455 CD2 VS E PRO 100 CG Distance: 5.124037 - Hydrophobic, 24 - C LEU 455 CB VS E TYR 105 CD1 Distance: 5.086442 - Hydrophobic, 25 - C LEU 455 CB VS E TYR 105 CE1 Distance: 5.150486 - Hydrophobic, 26 - C LEU 455 CG VS E TYR 105 CB Distance: 4.613728 - Hydrophobic, 27 - C LEU 455 CG VS E TYR 105 CG Distance: 4.149264 - Hydrophobic, 28 - C LEU 455 CG VS E TYR 105 CD1 Distance: 3.623840 - Hydrophobic, 29 - C LEU 455 CG VS E TYR 105 CD2 Distance: 4.807283 - Hydrophobic, 30 - C LEU 455 CG VS E TYR 105 CE1 Distance: 3.879772 - Hydrophobic, 31 - C LEU 455 CG VS E TYR 105 CE2 Distance: 5.014856 - Hydrophobic, 32 - C LEU 455 CD1 VS E TYR 105 CB Distance: 4.144156 - Hydrophobic, 33 - C LEU 455 CD1 VS E TYR 105 CG Distance: 4.096076 - Hydrophobic, 34 - C LEU 455 CD1 VS E TYR 105 CD1 Distance: 3.585677 - Hydrophobic, 35 - C LEU 455 CD1 VS E TYR 105 CD2 Distance: 5.092161 - Hydrophobic, 36 - C LEU 455 CD1 VS E TYR 105 CE1 Distance: 4.258068 - Hydrophobic, 37 - C LEU 455 CD2 VS E TYR 105 CB Distance: 4.298844 - Hydrophobic, 38 - C LEU 455 CD2 VS E TYR 105 CG Distance: 3.911455 - Hydrophobic, 39 - C LEU 455 CD2 VS E TYR 105 CD1 Distance: 3.868934 - Hydrophobic, 40 - C LEU 455 CD2 VS E TYR 105 CD2 Distance: 4.261021 - Hydrophobic, 41 - C LEU 455 CD2 VS E TYR 105 CE1 Distance: 4.205778 - Hydrophobic, 42 - C LEU 455 CD2 VS E TYR 105 CE2 Distance: 4.576408 - Hydrophobic, 43 - C PHE 456 CD2 VS E PRO 100 CB Distance: 5.493500 - Hydrophobic, 44 - C PHE 456 CE2 VS E PRO 100 CB Distance: 4.787167 - Hydrophobic, 45 - C PHE 456 CE2 VS E PRO 100 CG Distance: 4.802195 - Hydrophobic, 46 - C PHE 456 CZ VS E PRO 100 CB Distance: 5.265999 - Hydrophobic, 47 - C PHE 456 CZ VS E PRO 100 CG Distance: 5.282848 - Hydrophobic, 48 - C PHE 456 CB VS E TYR 105 CE1 Distance: 4.862484 - Hydrophobic, 49 - C PHE 456 CG VS E TYR 105 CG Distance: 6.289166 - Aromatic Stacking, 50 - C PHE 456 CG VS E TYR 105 CE1 Distance: 5.185911 - Hydrophobic, 51 - C PHE 456 CD2 VS E TYR 105 CD1 Distance: 5.357265 - Hydrophobic, 52 - C PHE 456 CD2 VS E TYR 105 CE1 Distance: 4.517221 - Hydrophobic, 53 - C PHE 456 CD2 VS E TYR 105 CE2 Distance: 5.214557 - Hydrophobic, 54 - C PHE 456 CE2 VS E TYR 105 CE1 Distance: 5.311994 - Hydrophobic, 55 - C PHE 456 CE2 VS E TYR 105 CE2 Distance: 5.494576 - Hydrophobic, 56 - C VAL 483 CG1 VS E ILE 57 CG2 Distance: 5.093135 - Hydrophobic, 57 - C VAL 483 CG1 VS E ILE 57 CD1 Distance: 5.021870 - Hydrophobic, 58 - C GLU 484 OE1 VS E ASN 32 ND2 Distance: 4.543236 - Hydrogen Bonds, 59 - C GLU 484 CB VS E THR 52 CG2 Distance: 3.787725 - Hydrophobic, 60 - C GLU 484 CG VS E THR 52 CG2 Distance: 4.456389 - Hydrophobic, 61 - C GLU 484 OE2 VS E THR 52 OG1 Distance: 4.200286 - Hydrogen Bonds, 62 - C GLU 484 OE1 VS E ARG 54 NE Distance: 6.052111 - Attractive, 63 - C GLU 484 OE1 VS E ARG 54 CZ Distance: 6.145445 - Attractive, 64 - C GLU 484 OE1 VS E ARG 54 NH2 Distance: 5.641979 - Attractive, 65 - C GLU 484 OE2 VS E ARG 54 NE Distance: 4.579179 - Attractive, Hydrogen Bonds, 66 - C GLU 484 OE2 VS E ARG 54 CZ Distance: 4.969549 - Attractive, 67 - C GLU 484 OE2 VS E ARG 54 NH1 Distance: 6.124062 - Attractive, 68 - C GLU 484 OE2 VS E ARG 54 NH2 Distance: 4.566155 - Attractive, Hydrogen Bonds, 69 - C GLU 484 CB VS E ILE 57 CB Distance: 5.288654 - Hydrophobic, 70 - C GLU 484 CB VS E ILE 57 CG2 Distance: 5.102510 - Hydrophobic, 71 - C GLU 484 CB VS E ILE 57 CD1 Distance: 4.575155 - Hydrophobic, 72 - C GLU 484 CG VS E ILE 57 CD1 Distance: 5.146173 - Hydrophobic, 73 - C GLY 485 O VS E TYR 59 OH Distance: 4.163748 - Hydrogen Bonds, 74 - C PHE 486 CG VS E LEU 47 CD2 Distance: 5.155691 - Hydrophobic, 75 - C PHE 486 CD2 VS E LEU 47 CB Distance: 5.038309 - Hydrophobic, 76 - C PHE 486 CD2 VS E LEU 47 CG Distance: 4.811518 - Hydrophobic, 77 - C PHE 486 CD2 VS E LEU 47 CD2 Distance: 4.004597 - Hydrophobic, 78 - C PHE 486 CE2 VS E LEU 47 CB Distance: 4.359256 - Hydrophobic, 79 - C PHE 486 CE2 VS E LEU 47 CG Distance: 4.147878 - Hydrophobic, 80 - C PHE 486 CE2 VS E LEU 47 CD2 Distance: 3.758547 - Hydrophobic, 81 - C PHE 486 CZ VS E LEU 47 CB Distance: 5.278234 - Hydrophobic, 82 - C PHE 486 CZ VS E LEU 47 CG Distance: 4.942669 - Hydrophobic, 83 - C PHE 486 CZ VS E LEU 47 CD2 Distance: 4.750256 - Hydrophobic, 84 - C PHE 486 N VS E TYR 59 OH Distance: 4.610549 - Hydrogen Bonds, 85 - C PHE 486 CB VS E TYR 59 CD1 Distance: 4.676629 - Hydrophobic, 86 - C PHE 486 CB VS E TYR 59 CE1 Distance: 4.519998 - Hydrophobic, 87 - C PHE 486 CG VS E TYR 59 CG Distance: 4.934569 - Hydrophobic, 88 - C PHE 486 CG VS E TYR 59 CG Distance: 4.637324 - Aromatic Stacking, 89 - C PHE 486 CG VS E TYR 59 CD1 Distance: 3.870773 - Hydrophobic, 90 - C PHE 486 CG VS E TYR 59 CE1 Distance: 3.808363 - Hydrophobic, 91 - C PHE 486 CD1 VS E TYR 59 CB Distance: 4.755813 - Hydrophobic, 92 - C PHE 486 CD1 VS E TYR 59 CG Distance: 4.518742 - Hydrophobic, 93 - C PHE 486 CD1 VS E TYR 59 CD1 Distance: 3.573332 - Hydrophobic, 94 - C PHE 486 CD1 VS E TYR 59 CE1 Distance: 3.973283 - Hydrophobic, 95 - C PHE 486 CD2 VS E TYR 59 CG Distance: 5.352062 - Hydrophobic, 96 - C PHE 486 CD2 VS E TYR 59 CD1 Distance: 4.106729 - Hydrophobic, 97 - C PHE 486 CD2 VS E TYR 59 CE1 Distance: 3.713765 - Hydrophobic, 98 - C PHE 486 CE1 VS E TYR 59 CB Distance: 4.696764 - Hydrophobic, 99 - C PHE 486 CE1 VS E TYR 59 CG Distance: 4.565638 - Hydrophobic, 100 - C PHE 486 CE1 VS E TYR 59 CD1 Distance: 3.538491 - Hydrophobic, 101 - C PHE 486 CE1 VS E TYR 59 CE1 Distance: 4.050655 - Hydrophobic, 102 - C PHE 486 CE2 VS E TYR 59 CG Distance: 5.388229 - Hydrophobic, 103 - C PHE 486 CE2 VS E TYR 59 CD1 Distance: 4.074183 - Hydrophobic, 104 - C PHE 486 CE2 VS E TYR 59 CE1 Distance: 3.796523 - Hydrophobic, 105 - C PHE 486 CZ VS E TYR 59 CB Distance: 5.403496 - Hydrophobic, 106 - C PHE 486 CZ VS E TYR 59 CG Distance: 5.011412 - Hydrophobic, 107 - C PHE 486 CZ VS E TYR 59 CD1 Distance: 3.795677 - Hydrophobic, 108 - C PHE 486 CZ VS E TYR 59 CE1 Distance: 3.957987 - Hydrophobic, 109 - C PHE 486 CE1 VS E ALA 61 CB Distance: 4.940004 - Hydrophobic, 110 - C PHE 486 CE2 VS E ALA 61 CB Distance: 4.935733 - Hydrophobic, 111 - C PHE 486 CZ VS E ALA 61 CB Distance: 4.173054 - Hydrophobic, 112 - C TYR 489 CD2 VS E ALA 33 CB Distance: 5.267085 - Hydrophobic, 113 - C TYR 489 CE2 VS E ALA 33 CB Distance: 5.490786 - Hydrophobic, 114 - C TYR 489 CD2 VS E ASP 99 CB Distance: 4.515851 - Hydrophobic, 115 - C TYR 489 CE2 VS E ASP 99 CB Distance: 3.731195 - Hydrophobic, 116 - C TYR 489 OH VS E ASP 99 O Distance: 2.867998 - Hydrogen Bonds, 117 - C TYR 489 CB VS E PRO 100 CB Distance: 5.322052 - Hydrophobic, 118 - C TYR 489 CB VS E PRO 100 CG Distance: 5.400027 - Hydrophobic, 119 - C TYR 489 CG VS E PRO 100 CB Distance: 4.440912 - Hydrophobic, 120 - C TYR 489 CG VS E PRO 100 CG Distance: 4.755002 - Hydrophobic, 121 - C TYR 489 CD1 VS E PRO 100 CB Distance: 4.667307 - Hydrophobic, 122 - C TYR 489 CD1 VS E PRO 100 CG Distance: 5.370698 - Hydrophobic, 123 - C TYR 489 CD2 VS E PRO 100 CB Distance: 3.944115 - Hydrophobic, 124 - C TYR 489 CD2 VS E PRO 100 CG Distance: 4.024692 - Hydrophobic, 125 - C TYR 489 CE1 VS E PRO 100 CB Distance: 4.412742 - Hydrophobic, 126 - C TYR 489 CE1 VS E PRO 100 CG Distance: 5.325639 - Hydrophobic, 127 - C TYR 489 CE2 VS E PRO 100 CB Distance: 3.646349 - Hydrophobic, 128 - C TYR 489 CE2 VS E PRO 100 CG Distance: 3.973858 - Hydrophobic, 129 - C PHE 490 O VS E ASN 32 ND2 Distance: 2.939215 - Hydrogen Bonds, 130 - C PHE 490 CB VS E ASN 32 CB Distance: 4.440773 - Hydrophobic, 131 - C PHE 490 CG VS E ASN 32 CB Distance: 5.261923 - Hydrophobic, 132 - C PHE 490 CD2 VS E ASN 32 CB Distance: 5.012376 - Hydrophobic, 133 - C LEU 492 O VS E ASN 32 N Distance: 4.704518 - Hydrogen Bonds, 134 - C GLN 493 CB VS E ARG 31 CB Distance: 5.422932 - Hydrophobic, 135 - C GLN 493 CB VS E ARG 31 CG Distance: 5.397899 - Hydrophobic, 136 - C GLN 493 CG VS E ARG 31 CB Distance: 5.483764 - Hydrophobic, 137 - C GLN 493 OE1 VS E ARG 31 N Distance: 4.531898 - Hydrogen Bonds, 138 - C GLN 493 OE1 VS E ARG 31 NE Distance: 3.486252 - Hydrogen Bonds, 139 - C GLN 493 CG VS E ASN 32 CB Distance: 5.468592 - Hydrophobic, 140 - C GLN 493 OE1 VS E ASN 32 N Distance: 2.825468 - Hydrogen Bonds, 141 - C GLN 493 OE1 VS E ASN 32 ND2 Distance: 3.993774 - Hydrogen Bonds, 142 - C GLN 493 NE2 VS E ASN 32 OD1 Distance: 4.253888 - Hydrogen Bonds, 143 - C SER 494 N VS E GLY 30 O Distance: 2.963295 - Hydrogen Bonds, 144 - C SER 494 OG VS E GLY 30 O Distance: 3.928481 - Hydrogen Bonds, 145 - C SER 494 O VS E ARG 31 N Distance: 4.730300 - Hydrogen Bonds, 146 - C SER 494 OG VS E ARG 53 NE Distance: 4.324977 - Hydrogen Bonds, 147 - C TYR 495 O VS E TYR 27 N Distance: 3.461792 - Hydrogen Bonds, 148 - C TYR 495 CB VS E TYR 27 CD1 Distance: 5.455319 - Hydrophobic, 149 - C TYR 495 CD2 VS E TYR 27 CD1 Distance: 4.834184 - Hydrophobic, 150 - C TYR 495 CD2 VS E TYR 27 CE1 Distance: 4.649435 - Hydrophobic, 151 - C TYR 495 CE2 VS E TYR 27 CE1 Distance: 5.112667 - Hydrophobic, 152 - C GLY 496 N VS E GLY 26 O Distance: 4.418002 - Hydrogen Bonds, 153 - C GLY 496 O VS E GLY 26 N Distance: 4.261351 - Hydrogen Bonds, 154 - C GLY 496 O VS E TYR 27 N Distance: 4.076250 - Hydrogen Bonds, 155 - C GLN 498 OE1 VS E GLY 26 N Distance: 2.869985 - Hydrogen Bonds, 156 - C GLN 498 OE1 VS E TYR 27 N Distance: 4.878683 - Hydrogen Bonds, 157 - C TYR 505 CE1 VS E GLN 3 CG Distance: 5.467762 - Hydrophobic, 158 - C TYR 505 CE2 VS E GLN 3 CG Distance: 5.213652 - Hydrophobic, 159 - C TYR 505 OH VS E GLN 3 NE2 Distance: 4.465295 - Hydrogen Bonds, 160 - C TYR 505 CG VS E TYR 27 CB Distance: 5.460739 - Hydrophobic, 161 - C TYR 505 CG VS E TYR 27 CG Distance: 5.365597 - Hydrophobic, 162 - C TYR 505 CG VS E TYR 27 CG Distance: 5.075996 - Aromatic Stacking, 163 - C TYR 505 CG VS E TYR 27 CD1 Distance: 5.341809 - Hydrophobic, 164 - C TYR 505 CD2 VS E TYR 27 CB Distance: 4.264387 - Hydrophobic, 165 - C TYR 505 CD2 VS E TYR 27 CG Distance: 4.018493 - Hydrophobic, 166 - C TYR 505 CD2 VS E TYR 27 CD1 Distance: 4.036155 - Hydrophobic, 167 - C TYR 505 CD2 VS E TYR 27 CD2 Distance: 4.453940 - Hydrophobic, 168 - C TYR 505 CD2 VS E TYR 27 CE1 Distance: 4.487340 - Hydrophobic, 169 - C TYR 505 CD2 VS E TYR 27 CE2 Distance: 4.861846 - Hydrophobic, 170 - C TYR 505 CE2 VS E TYR 27 CB Distance: 4.356063 - Hydrophobic, 171 - C TYR 505 CE2 VS E TYR 27 CG Distance: 3.807419 - Hydrophobic, 172 - C TYR 505 CE2 VS E TYR 27 CD1 Distance: 4.011452 - Hydrophobic, 173 - C TYR 505 CE2 VS E TYR 27 CD2 Distance: 3.813634 - Hydrophobic, 174 - C TYR 505 CE2 VS E TYR 27 CE1 Distance: 4.212510 - Hydrophobic, 175 - C TYR 505 CE2 VS E TYR 27 CE2 Distance: 4.017796 - Hydrophobic,