VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - A ARG 403 CB VS B TYR 27 CE1 Distance: 5.485784 - Hydrophobic, 1 - A ARG 403 CG VS B TYR 27 CD1 Distance: 5.416643 - Hydrophobic, 2 - A ARG 403 CG VS B TYR 27 CE1 Distance: 5.112175 - Hydrophobic, 3 - A ARG 403 NE VS B TYR 27 OH Distance: 3.901373 - Hydrogen Bonds, 4 - A ARG 403 NH2 VS B TYR 27 OH Distance: 3.811918 - Hydrogen Bonds, 5 - A LYS 417 NZ VS B ALA 104 O Distance: 3.897731 - Hydrogen Bonds, 6 - A LYS 417 CG VS B TYR 105 CD1 Distance: 5.477990 - Hydrophobic, 7 - A LYS 417 CD VS B TYR 105 CD1 Distance: 4.928508 - Hydrophobic, 8 - A LYS 417 CD VS B TYR 105 CE1 Distance: 5.272520 - Hydrophobic, 9 - A GLY 446 O VS B ASN 77 ND2 Distance: 3.081441 - Hydrogen Bonds, 10 - A TYR 449 OH VS B GLY 26 N Distance: 4.302492 - Hydrogen Bonds, 11 - A TYR 449 OH VS B GLY 26 O Distance: 4.385385 - Hydrogen Bonds, 12 - A TYR 449 CG VS B PHE 29 CG Distance: 6.693376 - Aromatic Stacking, 13 - A TYR 449 CE1 VS B PHE 29 CD1 Distance: 5.391868 - Hydrophobic, 14 - A TYR 449 CE2 VS B PHE 29 CB Distance: 4.715657 - Hydrophobic, 15 - A TYR 449 CE2 VS B PHE 29 CG Distance: 5.177450 - Hydrophobic, 16 - A TYR 449 CE2 VS B PHE 29 CD1 Distance: 4.603788 - Hydrophobic, 17 - A TYR 449 OH VS B ASN 77 OD1 Distance: 3.269912 - Hydrogen Bonds, 18 - A TYR 449 OH VS B ASN 77 ND2 Distance: 3.390330 - Hydrogen Bonds, 19 - A TYR 453 CG VS B TYR 27 CD1 Distance: 6.768677 - Aromatic Stacking, 20 - A TYR 453 CE2 VS B TYR 27 CE1 Distance: 5.018572 - Hydrophobic, 21 - A TYR 453 OH VS B TYR 27 O Distance: 4.778988 - Hydrogen Bonds, 22 - A TYR 453 OH VS B TYR 27 OH Distance: 4.056987 - Hydrogen Bonds, 23 - A TYR 453 OH VS B ARG 31 NE Distance: 4.793517 - Hydrogen Bonds, 24 - A LEU 455 CD2 VS B PRO 100 CG Distance: 5.156647 - Hydrophobic, 25 - A LEU 455 CB VS B TYR 105 CD1 Distance: 5.078975 - Hydrophobic, 26 - A LEU 455 CB VS B TYR 105 CE1 Distance: 5.154601 - Hydrophobic, 27 - A LEU 455 CG VS B TYR 105 CB Distance: 4.591681 - Hydrophobic, 28 - A LEU 455 CG VS B TYR 105 CG Distance: 4.136562 - Hydrophobic, 29 - A LEU 455 CG VS B TYR 105 CD1 Distance: 3.616289 - Hydrophobic, 30 - A LEU 455 CG VS B TYR 105 CD2 Distance: 4.801290 - Hydrophobic, 31 - A LEU 455 CG VS B TYR 105 CE1 Distance: 3.885711 - Hydrophobic, 32 - A LEU 455 CG VS B TYR 105 CE2 Distance: 5.018054 - Hydrophobic, 33 - A LEU 455 CD1 VS B TYR 105 CB Distance: 4.134818 - Hydrophobic, 34 - A LEU 455 CD1 VS B TYR 105 CG Distance: 4.094059 - Hydrophobic, 35 - A LEU 455 CD1 VS B TYR 105 CD1 Distance: 3.584494 - Hydrophobic, 36 - A LEU 455 CD1 VS B TYR 105 CD2 Distance: 5.096508 - Hydrophobic, 37 - A LEU 455 CD1 VS B TYR 105 CE1 Distance: 4.265359 - Hydrophobic, 38 - A LEU 455 CD2 VS B TYR 105 CB Distance: 4.261761 - Hydrophobic, 39 - A LEU 455 CD2 VS B TYR 105 CG Distance: 3.891142 - Hydrophobic, 40 - A LEU 455 CD2 VS B TYR 105 CD1 Distance: 3.856852 - Hydrophobic, 41 - A LEU 455 CD2 VS B TYR 105 CD2 Distance: 4.252552 - Hydrophobic, 42 - A LEU 455 CD2 VS B TYR 105 CE1 Distance: 4.212523 - Hydrophobic, 43 - A LEU 455 CD2 VS B TYR 105 CE2 Distance: 4.584272 - Hydrophobic, 44 - A PHE 456 CD2 VS B PRO 100 CB Distance: 5.476001 - Hydrophobic, 45 - A PHE 456 CE2 VS B PRO 100 CB Distance: 4.725492 - Hydrophobic, 46 - A PHE 456 CE2 VS B PRO 100 CG Distance: 4.748466 - Hydrophobic, 47 - A PHE 456 CZ VS B PRO 100 CB Distance: 5.169732 - Hydrophobic, 48 - A PHE 456 CZ VS B PRO 100 CG Distance: 5.194204 - Hydrophobic, 49 - A PHE 456 CB VS B TYR 105 CE1 Distance: 4.856384 - Hydrophobic, 50 - A PHE 456 CG VS B TYR 105 CG Distance: 6.219071 - Aromatic Stacking, 51 - A PHE 456 CG VS B TYR 105 CE1 Distance: 5.155674 - Hydrophobic, 52 - A PHE 456 CD2 VS B TYR 105 CD1 Distance: 5.298474 - Hydrophobic, 53 - A PHE 456 CD2 VS B TYR 105 CE1 Distance: 4.464895 - Hydrophobic, 54 - A PHE 456 CD2 VS B TYR 105 CE2 Distance: 5.146472 - Hydrophobic, 55 - A PHE 456 CE2 VS B TYR 105 CE1 Distance: 5.242052 - Hydrophobic, 56 - A PHE 456 CE2 VS B TYR 105 CE2 Distance: 5.395084 - Hydrophobic, 57 - A VAL 483 CG1 VS B ILE 57 CG2 Distance: 4.919989 - Hydrophobic, 58 - A VAL 483 CG1 VS B ILE 57 CD1 Distance: 4.751640 - Hydrophobic, 59 - A GLU 484 OE1 VS B ASN 32 ND2 Distance: 4.563394 - Hydrogen Bonds, 60 - A GLU 484 CB VS B THR 52 CG2 Distance: 3.732141 - Hydrophobic, 61 - A GLU 484 CG VS B THR 52 CG2 Distance: 4.390519 - Hydrophobic, 62 - A GLU 484 OE2 VS B THR 52 OG1 Distance: 4.007816 - Hydrogen Bonds, 63 - A GLU 484 OE1 VS B ARG 54 NE Distance: 6.106221 - Attractive, 64 - A GLU 484 OE1 VS B ARG 54 CZ Distance: 6.100496 - Attractive, 65 - A GLU 484 OE1 VS B ARG 54 NH2 Distance: 5.470702 - Attractive, 66 - A GLU 484 OE2 VS B ARG 54 NE Distance: 5.008129 - Attractive, 67 - A GLU 484 OE2 VS B ARG 54 CZ Distance: 5.360290 - Attractive, 68 - A GLU 484 OE2 VS B ARG 54 NH1 Distance: 6.530059 - Attractive, 69 - A GLU 484 OE2 VS B ARG 54 NH2 Distance: 4.850132 - Attractive, Hydrogen Bonds, 70 - A GLU 484 CB VS B ILE 57 CB Distance: 5.177204 - Hydrophobic, 71 - A GLU 484 CB VS B ILE 57 CG1 Distance: 5.439771 - Hydrophobic, 72 - A GLU 484 CB VS B ILE 57 CG2 Distance: 5.009994 - Hydrophobic, 73 - A GLU 484 CB VS B ILE 57 CD1 Distance: 4.435904 - Hydrophobic, 74 - A GLU 484 CG VS B ILE 57 CD1 Distance: 5.031503 - Hydrophobic, 75 - A GLY 485 O VS B TYR 59 OH Distance: 4.191459 - Hydrogen Bonds, 76 - A PHE 486 CG VS B LEU 47 CD2 Distance: 5.121969 - Hydrophobic, 77 - A PHE 486 CD2 VS B LEU 47 CB Distance: 4.977056 - Hydrophobic, 78 - A PHE 486 CD2 VS B LEU 47 CG Distance: 4.736309 - Hydrophobic, 79 - A PHE 486 CD2 VS B LEU 47 CD2 Distance: 3.969276 - Hydrophobic, 80 - A PHE 486 CE2 VS B LEU 47 CB Distance: 4.297068 - Hydrophobic, 81 - A PHE 486 CE2 VS B LEU 47 CG Distance: 4.064791 - Hydrophobic, 82 - A PHE 486 CE2 VS B LEU 47 CD2 Distance: 3.727811 - Hydrophobic, 83 - A PHE 486 CZ VS B LEU 47 CB Distance: 5.221724 - Hydrophobic, 84 - A PHE 486 CZ VS B LEU 47 CG Distance: 4.862349 - Hydrophobic, 85 - A PHE 486 CZ VS B LEU 47 CD2 Distance: 4.724880 - Hydrophobic, 86 - A PHE 486 N VS B TYR 59 OH Distance: 4.667965 - Hydrogen Bonds, 87 - A PHE 486 CB VS B TYR 59 CD1 Distance: 4.723950 - Hydrophobic, 88 - A PHE 486 CB VS B TYR 59 CE1 Distance: 4.570922 - Hydrophobic, 89 - A PHE 486 CG VS B TYR 59 CG Distance: 5.010400 - Hydrophobic, 90 - A PHE 486 CG VS B TYR 59 CG Distance: 4.685105 - Aromatic Stacking, 91 - A PHE 486 CG VS B TYR 59 CD1 Distance: 3.922022 - Hydrophobic, 92 - A PHE 486 CG VS B TYR 59 CE1 Distance: 3.854575 - Hydrophobic, 93 - A PHE 486 CD1 VS B TYR 59 CB Distance: 4.822695 - Hydrophobic, 94 - A PHE 486 CD1 VS B TYR 59 CG Distance: 4.576536 - Hydrophobic, 95 - A PHE 486 CD1 VS B TYR 59 CD1 Distance: 3.602180 - Hydrophobic, 96 - A PHE 486 CD1 VS B TYR 59 CE1 Distance: 3.991317 - Hydrophobic, 97 - A PHE 486 CD2 VS B TYR 59 CG Distance: 5.422522 - Hydrophobic, 98 - A PHE 486 CD2 VS B TYR 59 CD1 Distance: 4.164140 - Hydrophobic, 99 - A PHE 486 CD2 VS B TYR 59 CE1 Distance: 3.766055 - Hydrophobic, 100 - A PHE 486 CE1 VS B TYR 59 CB Distance: 4.747090 - Hydrophobic, 101 - A PHE 486 CE1 VS B TYR 59 CG Distance: 4.599109 - Hydrophobic, 102 - A PHE 486 CE1 VS B TYR 59 CD1 Distance: 3.551705 - Hydrophobic, 103 - A PHE 486 CE1 VS B TYR 59 CE1 Distance: 4.047866 - Hydrophobic, 104 - A PHE 486 CE2 VS B TYR 59 CG Distance: 5.439871 - Hydrophobic, 105 - A PHE 486 CE2 VS B TYR 59 CD1 Distance: 4.119993 - Hydrophobic, 106 - A PHE 486 CE2 VS B TYR 59 CE1 Distance: 3.827693 - Hydrophobic, 107 - A PHE 486 CZ VS B TYR 59 CB Distance: 5.452496 - Hydrophobic, 108 - A PHE 486 CZ VS B TYR 59 CG Distance: 5.044292 - Hydrophobic, 109 - A PHE 486 CZ VS B TYR 59 CD1 Distance: 3.819857 - Hydrophobic, 110 - A PHE 486 CZ VS B TYR 59 CE1 Distance: 3.962087 - Hydrophobic, 111 - A PHE 486 CE1 VS B ALA 61 CB Distance: 4.883866 - Hydrophobic, 112 - A PHE 486 CE2 VS B ALA 61 CB Distance: 4.908611 - Hydrophobic, 113 - A PHE 486 CZ VS B ALA 61 CB Distance: 4.137239 - Hydrophobic, 114 - A TYR 489 CD2 VS B ALA 33 CB Distance: 5.301724 - Hydrophobic, 115 - A TYR 489 CD2 VS B ASP 99 CB Distance: 4.502329 - Hydrophobic, 116 - A TYR 489 CE2 VS B ASP 99 CB Distance: 3.726579 - Hydrophobic, 117 - A TYR 489 OH VS B ASP 99 O Distance: 2.864620 - Hydrogen Bonds, 118 - A TYR 489 CB VS B PRO 100 CB Distance: 5.269850 - Hydrophobic, 119 - A TYR 489 CB VS B PRO 100 CG Distance: 5.359713 - Hydrophobic, 120 - A TYR 489 CG VS B PRO 100 CB Distance: 4.401204 - Hydrophobic, 121 - A TYR 489 CG VS B PRO 100 CG Distance: 4.729664 - Hydrophobic, 122 - A TYR 489 CD1 VS B PRO 100 CB Distance: 4.640881 - Hydrophobic, 123 - A TYR 489 CD1 VS B PRO 100 CG Distance: 5.357924 - Hydrophobic, 124 - A TYR 489 CD2 VS B PRO 100 CB Distance: 3.908154 - Hydrophobic, 125 - A TYR 489 CD2 VS B PRO 100 CG Distance: 4.003254 - Hydrophobic, 126 - A TYR 489 CE1 VS B PRO 100 CB Distance: 4.401818 - Hydrophobic, 127 - A TYR 489 CE1 VS B PRO 100 CG Distance: 5.326053 - Hydrophobic, 128 - A TYR 489 CE2 VS B PRO 100 CB Distance: 3.628202 - Hydrophobic, 129 - A TYR 489 CE2 VS B PRO 100 CG Distance: 3.969137 - Hydrophobic, 130 - A PHE 490 O VS B ASN 32 ND2 Distance: 2.935160 - Hydrogen Bonds, 131 - A PHE 490 CB VS B ASN 32 CB Distance: 4.488372 - Hydrophobic, 132 - A PHE 490 CG VS B ASN 32 CB Distance: 5.387342 - Hydrophobic, 133 - A PHE 490 CD2 VS B ASN 32 CB Distance: 5.257696 - Hydrophobic, 134 - A LEU 492 O VS B ASN 32 N Distance: 4.751981 - Hydrogen Bonds, 135 - A GLN 493 CB VS B ARG 31 CB Distance: 5.331349 - Hydrophobic, 136 - A GLN 493 CB VS B ARG 31 CG Distance: 5.333073 - Hydrophobic, 137 - A GLN 493 CG VS B ARG 31 CB Distance: 5.389086 - Hydrophobic, 138 - A GLN 493 CG VS B ARG 31 CG Distance: 5.444078 - Hydrophobic, 139 - A GLN 493 OE1 VS B ARG 31 N Distance: 4.662282 - Hydrogen Bonds, 140 - A GLN 493 OE1 VS B ARG 31 NE Distance: 3.066703 - Hydrogen Bonds, 141 - A GLN 493 OE1 VS B ARG 31 NH2 Distance: 4.786948 - Hydrogen Bonds, 142 - A GLN 493 CG VS B ASN 32 CB Distance: 5.424750 - Hydrophobic, 143 - A GLN 493 OE1 VS B ASN 32 N Distance: 2.908412 - Hydrogen Bonds, 144 - A GLN 493 OE1 VS B ASN 32 ND2 Distance: 3.951566 - Hydrogen Bonds, 145 - A GLN 493 NE2 VS B ASN 32 OD1 Distance: 4.189464 - Hydrogen Bonds, 146 - A SER 494 N VS B GLY 30 O Distance: 2.936649 - Hydrogen Bonds, 147 - A SER 494 OG VS B GLY 30 O Distance: 3.916721 - Hydrogen Bonds, 148 - A SER 494 O VS B ARG 31 N Distance: 4.698400 - Hydrogen Bonds, 149 - A SER 494 OG VS B ARG 53 NE Distance: 4.316049 - Hydrogen Bonds, 150 - A TYR 495 O VS B TYR 27 N Distance: 3.475998 - Hydrogen Bonds, 151 - A TYR 495 CB VS B TYR 27 CD1 Distance: 5.462204 - Hydrophobic, 152 - A TYR 495 CD2 VS B TYR 27 CD1 Distance: 4.843904 - Hydrophobic, 153 - A TYR 495 CD2 VS B TYR 27 CE1 Distance: 4.652406 - Hydrophobic, 154 - A TYR 495 CE2 VS B TYR 27 CE1 Distance: 5.118375 - Hydrophobic, 155 - A GLY 496 N VS B GLY 26 O Distance: 4.417806 - Hydrogen Bonds, 156 - A GLY 496 O VS B GLY 26 N Distance: 4.263907 - Hydrogen Bonds, 157 - A GLY 496 O VS B TYR 27 N Distance: 4.063904 - Hydrogen Bonds, 158 - A GLN 498 OE1 VS B GLY 26 N Distance: 2.863832 - Hydrogen Bonds, 159 - A GLN 498 OE1 VS B TYR 27 N Distance: 4.868207 - Hydrogen Bonds, 160 - A TYR 505 CE1 VS B GLN 3 CG Distance: 5.459103 - Hydrophobic, 161 - A TYR 505 CE2 VS B GLN 3 CG Distance: 5.196274 - Hydrophobic, 162 - A TYR 505 OH VS B GLN 3 NE2 Distance: 4.451707 - Hydrogen Bonds, 163 - A TYR 505 CG VS B TYR 27 CB Distance: 5.454577 - Hydrophobic, 164 - A TYR 505 CG VS B TYR 27 CG Distance: 5.358096 - Hydrophobic, 165 - A TYR 505 CG VS B TYR 27 CG Distance: 5.071834 - Aromatic Stacking, 166 - A TYR 505 CG VS B TYR 27 CD1 Distance: 5.330677 - Hydrophobic, 167 - A TYR 505 CD2 VS B TYR 27 CB Distance: 4.261198 - Hydrophobic, 168 - A TYR 505 CD2 VS B TYR 27 CG Distance: 4.012378 - Hydrophobic, 169 - A TYR 505 CD2 VS B TYR 27 CD1 Distance: 4.026410 - Hydrophobic, 170 - A TYR 505 CD2 VS B TYR 27 CD2 Distance: 4.449189 - Hydrophobic, 171 - A TYR 505 CD2 VS B TYR 27 CE1 Distance: 4.477783 - Hydrophobic, 172 - A TYR 505 CD2 VS B TYR 27 CE2 Distance: 4.857320 - Hydrophobic, 173 - A TYR 505 CE2 VS B TYR 27 CB Distance: 4.357803 - Hydrophobic, 174 - A TYR 505 CE2 VS B TYR 27 CG Distance: 3.805715 - Hydrophobic, 175 - A TYR 505 CE2 VS B TYR 27 CD1 Distance: 4.006079 - Hydrophobic, 176 - A TYR 505 CE2 VS B TYR 27 CD2 Distance: 3.812815 - Hydrophobic, 177 - A TYR 505 CE2 VS B TYR 27 CE1 Distance: 4.205924 - Hydrophobic, 178 - A TYR 505 CE2 VS B TYR 27 CE2 Distance: 4.016248 - Hydrophobic,