VIRAL PROTEIN, IMMUNE SYSTEM
STRUCTURE OF SARS-COV-2 S PROTEIN IN COMPLEX WITH N-TERMINAL DOMAIN ANTIBODY DH1052:

0 - X ARG 37 NH2  VS B GLU 654 OE1 
Distance: 6.283343 - Attractive, 
1 - X ARG 37 NH2  VS B GLU 654 OE2 
Distance: 6.823069 - Attractive, 
2 - X THR 39 OG1  VS B SER 689 OG  
Distance: 4.707345 - Hydrogen Bonds, 
3 - X SER 49 OG   VS B GLN 218 O   
Distance: 4.511591 - Hydrogen Bonds, 
4 - X SER 49 OG   VS B GLN 218 OE1 
Distance: 2.778652 - Hydrogen Bonds, 
5 - X SER 49 OG   VS B GLN 218 NE2 
Distance: 3.874762 - Hydrogen Bonds, 
6 - X SER 50 N    VS B GLN 218 OE1 
Distance: 3.518540 - Hydrogen Bonds, 
7 - X SER 50 OG   VS B GLN 218 OE1 
Distance: 4.039927 - Hydrogen Bonds, 
8 - X SER 50 OG   VS B GLN 218 NE2 
Distance: 2.924911 - Hydrogen Bonds, 
9 - X SER 51 N    VS B GLN 218 OE1 
Distance: 2.938699 - Hydrogen Bonds, 
10 - X SER 51 OG   VS B GLN 218 OE1 
Distance: 2.809410 - Hydrogen Bonds, 
11 - X SER 51 OG   VS B GLN 218 NE2 
Distance: 4.052968 - Hydrogen Bonds, 
12 - X TYR 52 CG   VS B PHE 32 CG  
Distance: 5.749057 - Aromatic Stacking, 
13 - X TYR 52 CD1  VS B PHE 32 CZ  
Distance: 5.165487 - Hydrophobic, 
14 - X TYR 52 CE1  VS B PHE 32 CE1 
Distance: 5.110647 - Hydrophobic, 
15 - X TYR 52 CE1  VS B PHE 32 CE2 
Distance: 4.937596 - Hydrophobic, 
16 - X TYR 52 CE1  VS B PHE 32 CZ  
Distance: 4.389146 - Hydrophobic, 
17 - X TYR 52 CE2  VS B PHE 32 CE2 
Distance: 5.451986 - Hydrophobic, 
18 - X TYR 52 CE2  VS B PHE 32 CZ  
Distance: 5.161100 - Hydrophobic, 
19 - X TYR 52 OH   VS B LEU 216 O   
Distance: 3.190593 - Hydrogen Bonds, 
20 - X TYR 52 OH   VS B PRO 217 O   
Distance: 4.803317 - Hydrogen Bonds, 
21 - X TYR 52 N    VS B GLN 218 OE1 
Distance: 4.204902 - Hydrogen Bonds, 
22 - X TYR 52 CG   VS B GLN 218 CB  
Distance: 5.191235 - Hydrophobic, 
23 - X TYR 52 CD1  VS B GLN 218 CB  
Distance: 5.483069 - Hydrophobic, 
24 - X TYR 52 CD2  VS B GLN 218 CB  
Distance: 4.218179 - Hydrophobic, 
25 - X TYR 52 CD2  VS B GLN 218 CG  
Distance: 5.096937 - Hydrophobic, 
26 - X TYR 52 CE1  VS B GLN 218 CB  
Distance: 4.911799 - Hydrophobic, 
27 - X TYR 52 CE2  VS B GLN 218 CB  
Distance: 3.470983 - Hydrophobic, 
28 - X TYR 52 CE2  VS B GLN 218 CG  
Distance: 4.680016 - Hydrophobic, 
29 - X TYR 52 OH   VS B GLN 218 N   
Distance: 2.937067 - Hydrogen Bonds, 
30 - X SER 87 OG   VS B ASN 606 N   
Distance: 3.787631 - Hydrogen Bonds, 
31 - X SER 87 OG   VS B ASN 606 ND2 
Distance: 2.914899 - Hydrogen Bonds, 
32 - X TYR 111 OH   VS B ASN 211 O   
Distance: 4.791225 - Hydrogen Bonds, 
33 - X TYR 111 CE1  VS B LEU 212 CG  
Distance: 5.028408 - Hydrophobic, 
34 - X TYR 111 CE1  VS B LEU 212 CD1 
Distance: 4.908693 - Hydrophobic, 
35 - X TYR 111 CE1  VS B LEU 212 CD2 
Distance: 5.081697 - Hydrophobic, 
36 - X SER 114 O    VS B ASN 211 ND2 
Distance: 4.514215 - Hydrogen Bonds, 
37 - X SER 114 OG   VS B ASN 211 N   
Distance: 4.321363 - Hydrogen Bonds, 
38 - X SER 114 OG   VS B ASN 211 ND2 
Distance: 3.052864 - Hydrogen Bonds,