VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - D ARG 403 CB VS F TYR 27 CE1 Distance: 5.486020 - Hydrophobic, 1 - D ARG 403 CG VS F TYR 27 CD1 Distance: 5.417905 - Hydrophobic, 2 - D ARG 403 CG VS F TYR 27 CE1 Distance: 5.115849 - Hydrophobic, 3 - D ARG 403 NE VS F TYR 27 OH Distance: 3.907233 - Hydrogen Bonds, 4 - D ARG 403 NH2 VS F TYR 27 OH Distance: 3.814066 - Hydrogen Bonds, 5 - D LYS 417 NZ VS F ALA 104 O Distance: 3.888440 - Hydrogen Bonds, 6 - D LYS 417 CD VS F TYR 105 CD1 Distance: 4.952995 - Hydrophobic, 7 - D LYS 417 CD VS F TYR 105 CE1 Distance: 5.328312 - Hydrophobic, 8 - D GLY 446 O VS F ASN 77 ND2 Distance: 3.083623 - Hydrogen Bonds, 9 - D TYR 449 OH VS F GLY 26 N Distance: 4.304129 - Hydrogen Bonds, 10 - D TYR 449 OH VS F GLY 26 O Distance: 4.383524 - Hydrogen Bonds, 11 - D TYR 449 CG VS F PHE 29 CG Distance: 6.694136 - Aromatic Stacking, 12 - D TYR 449 CE1 VS F PHE 29 CD1 Distance: 5.396988 - Hydrophobic, 13 - D TYR 449 CE2 VS F PHE 29 CB Distance: 4.715570 - Hydrophobic, 14 - D TYR 449 CE2 VS F PHE 29 CG Distance: 5.175935 - Hydrophobic, 15 - D TYR 449 CE2 VS F PHE 29 CD1 Distance: 4.600193 - Hydrophobic, 16 - D TYR 449 OH VS F ASN 77 OD1 Distance: 3.267376 - Hydrogen Bonds, 17 - D TYR 449 OH VS F ASN 77 ND2 Distance: 3.389709 - Hydrogen Bonds, 18 - D TYR 453 CG VS F TYR 27 CD1 Distance: 6.768601 - Aromatic Stacking, 19 - D TYR 453 CE2 VS F TYR 27 CE1 Distance: 5.015618 - Hydrophobic, 20 - D TYR 453 OH VS F TYR 27 O Distance: 4.783488 - Hydrogen Bonds, 21 - D TYR 453 OH VS F TYR 27 OH Distance: 4.047581 - Hydrogen Bonds, 22 - D TYR 453 OH VS F ARG 31 NE Distance: 4.796896 - Hydrogen Bonds, 23 - D LEU 455 CD2 VS F PRO 100 CG Distance: 5.098776 - Hydrophobic, 24 - D LEU 455 CB VS F TYR 105 CD1 Distance: 5.045720 - Hydrophobic, 25 - D LEU 455 CB VS F TYR 105 CE1 Distance: 5.150192 - Hydrophobic, 26 - D LEU 455 CG VS F TYR 105 CB Distance: 4.615704 - Hydrophobic, 27 - D LEU 455 CG VS F TYR 105 CG Distance: 4.196986 - Hydrophobic, 28 - D LEU 455 CG VS F TYR 105 CD1 Distance: 3.585990 - Hydrophobic, 29 - D LEU 455 CG VS F TYR 105 CD2 Distance: 4.958452 - Hydrophobic, 30 - D LEU 455 CG VS F TYR 105 CE1 Distance: 3.888897 - Hydrophobic, 31 - D LEU 455 CG VS F TYR 105 CE2 Distance: 5.193705 - Hydrophobic, 32 - D LEU 455 CD1 VS F TYR 105 CB Distance: 4.171063 - Hydrophobic, 33 - D LEU 455 CD1 VS F TYR 105 CG Distance: 4.169629 - Hydrophobic, 34 - D LEU 455 CD1 VS F TYR 105 CD1 Distance: 3.599386 - Hydrophobic, 35 - D LEU 455 CD1 VS F TYR 105 CD2 Distance: 5.239368 - Hydrophobic, 36 - D LEU 455 CD1 VS F TYR 105 CE1 Distance: 4.311499 - Hydrophobic, 37 - D LEU 455 CD2 VS F TYR 105 CB Distance: 4.285107 - Hydrophobic, 38 - D LEU 455 CD2 VS F TYR 105 CG Distance: 3.940166 - Hydrophobic, 39 - D LEU 455 CD2 VS F TYR 105 CD1 Distance: 3.799227 - Hydrophobic, 40 - D LEU 455 CD2 VS F TYR 105 CD2 Distance: 4.417465 - Hydrophobic, 41 - D LEU 455 CD2 VS F TYR 105 CE1 Distance: 4.177440 - Hydrophobic, 42 - D LEU 455 CD2 VS F TYR 105 CE2 Distance: 4.754717 - Hydrophobic, 43 - D PHE 456 CD2 VS F PRO 100 CB Distance: 5.497210 - Hydrophobic, 44 - D PHE 456 CE2 VS F PRO 100 CB Distance: 4.772626 - Hydrophobic, 45 - D PHE 456 CE2 VS F PRO 100 CG Distance: 4.791514 - Hydrophobic, 46 - D PHE 456 CZ VS F PRO 100 CB Distance: 5.247752 - Hydrophobic, 47 - D PHE 456 CZ VS F PRO 100 CG Distance: 5.265277 - Hydrophobic, 48 - D PHE 456 CB VS F TYR 105 CE1 Distance: 4.861167 - Hydrophobic, 49 - D PHE 456 CG VS F TYR 105 CG Distance: 6.306283 - Aromatic Stacking, 50 - D PHE 456 CG VS F TYR 105 CE1 Distance: 5.147242 - Hydrophobic, 51 - D PHE 456 CD2 VS F TYR 105 CD1 Distance: 5.271896 - Hydrophobic, 52 - D PHE 456 CD2 VS F TYR 105 CE1 Distance: 4.452908 - Hydrophobic, 53 - D PHE 456 CD2 VS F TYR 105 CE2 Distance: 5.358165 - Hydrophobic, 54 - D PHE 456 CE2 VS F TYR 105 CE1 Distance: 5.222290 - Hydrophobic, 55 - D VAL 483 CG1 VS F ILE 57 CG2 Distance: 5.050797 - Hydrophobic, 56 - D VAL 483 CG1 VS F ILE 57 CD1 Distance: 4.908714 - Hydrophobic, 57 - D GLU 484 OE1 VS F ASN 32 ND2 Distance: 4.581081 - Hydrogen Bonds, 58 - D GLU 484 CB VS F THR 52 CG2 Distance: 3.789493 - Hydrophobic, 59 - D GLU 484 CG VS F THR 52 CG2 Distance: 4.461903 - Hydrophobic, 60 - D GLU 484 OE2 VS F THR 52 OG1 Distance: 4.061816 - Hydrogen Bonds, 61 - D GLU 484 OE1 VS F ARG 54 NE Distance: 6.031314 - Attractive, 62 - D GLU 484 OE1 VS F ARG 54 CZ Distance: 6.084829 - Attractive, 63 - D GLU 484 OE1 VS F ARG 54 NH2 Distance: 5.464796 - Attractive, 64 - D GLU 484 OE2 VS F ARG 54 NE Distance: 4.894053 - Attractive, Hydrogen Bonds, 65 - D GLU 484 OE2 VS F ARG 54 CZ Distance: 5.277489 - Attractive, 66 - D GLU 484 OE2 VS F ARG 54 NH1 Distance: 6.481726 - Attractive, 67 - D GLU 484 OE2 VS F ARG 54 NH2 Distance: 4.759156 - Attractive, Hydrogen Bonds, 68 - D GLU 484 CB VS F ILE 57 CB Distance: 5.249556 - Hydrophobic, 69 - D GLU 484 CB VS F ILE 57 CG1 Distance: 5.498756 - Hydrophobic, 70 - D GLU 484 CB VS F ILE 57 CG2 Distance: 5.080660 - Hydrophobic, 71 - D GLU 484 CB VS F ILE 57 CD1 Distance: 4.483289 - Hydrophobic, 72 - D GLU 484 CG VS F ILE 57 CD1 Distance: 5.069629 - Hydrophobic, 73 - D GLY 485 O VS F TYR 59 OH Distance: 4.180650 - Hydrogen Bonds, 74 - D PHE 486 CG VS F LEU 47 CD2 Distance: 5.149689 - Hydrophobic, 75 - D PHE 486 CD2 VS F LEU 47 CB Distance: 5.075332 - Hydrophobic, 76 - D PHE 486 CD2 VS F LEU 47 CG Distance: 4.839470 - Hydrophobic, 77 - D PHE 486 CD2 VS F LEU 47 CD2 Distance: 4.002144 - Hydrophobic, 78 - D PHE 486 CE2 VS F LEU 47 CB Distance: 4.401951 - Hydrophobic, 79 - D PHE 486 CE2 VS F LEU 47 CG Distance: 4.178730 - Hydrophobic, 80 - D PHE 486 CE2 VS F LEU 47 CD2 Distance: 3.751166 - Hydrophobic, 81 - D PHE 486 CZ VS F LEU 47 CB Distance: 5.321085 - Hydrophobic, 82 - D PHE 486 CZ VS F LEU 47 CG Distance: 4.971293 - Hydrophobic, 83 - D PHE 486 CZ VS F LEU 47 CD2 Distance: 4.737430 - Hydrophobic, 84 - D PHE 486 N VS F TYR 59 OH Distance: 4.644828 - Hydrogen Bonds, 85 - D PHE 486 CB VS F TYR 59 CD1 Distance: 4.689865 - Hydrophobic, 86 - D PHE 486 CB VS F TYR 59 CE1 Distance: 4.547159 - Hydrophobic, 87 - D PHE 486 CG VS F TYR 59 CG Distance: 4.938872 - Hydrophobic, 88 - D PHE 486 CG VS F TYR 59 CG Distance: 4.649204 - Aromatic Stacking, 89 - D PHE 486 CG VS F TYR 59 CD1 Distance: 3.881302 - Hydrophobic, 90 - D PHE 486 CG VS F TYR 59 CE1 Distance: 3.837783 - Hydrophobic, 91 - D PHE 486 CD1 VS F TYR 59 CB Distance: 4.738428 - Hydrophobic, 92 - D PHE 486 CD1 VS F TYR 59 CG Distance: 4.519212 - Hydrophobic, 93 - D PHE 486 CD1 VS F TYR 59 CD1 Distance: 3.586591 - Hydrophobic, 94 - D PHE 486 CD1 VS F TYR 59 CE1 Distance: 4.003492 - Hydrophobic, 95 - D PHE 486 CD2 VS F TYR 59 CG Distance: 5.348982 - Hydrophobic, 96 - D PHE 486 CD2 VS F TYR 59 CD1 Distance: 4.106240 - Hydrophobic, 97 - D PHE 486 CD2 VS F TYR 59 CE1 Distance: 3.735521 - Hydrophobic, 98 - D PHE 486 CE1 VS F TYR 59 CB Distance: 4.664507 - Hydrophobic, 99 - D PHE 486 CE1 VS F TYR 59 CG Distance: 4.553713 - Hydrophobic, 100 - D PHE 486 CE1 VS F TYR 59 CD1 Distance: 3.541308 - Hydrophobic, 101 - D PHE 486 CE1 VS F TYR 59 CE1 Distance: 4.073523 - Hydrophobic, 102 - D PHE 486 CE2 VS F TYR 59 CG Distance: 5.374176 - Hydrophobic, 103 - D PHE 486 CE2 VS F TYR 59 CD1 Distance: 4.063944 - Hydrophobic, 104 - D PHE 486 CE2 VS F TYR 59 CE1 Distance: 3.810194 - Hydrophobic, 105 - D PHE 486 CZ VS F TYR 59 CB Distance: 5.365974 - Hydrophobic, 106 - D PHE 486 CZ VS F TYR 59 CG Distance: 4.993042 - Hydrophobic, 107 - D PHE 486 CZ VS F TYR 59 CD1 Distance: 3.786678 - Hydrophobic, 108 - D PHE 486 CZ VS F TYR 59 CE1 Distance: 3.972899 - Hydrophobic, 109 - D PHE 486 CE1 VS F ALA 61 CB Distance: 4.994268 - Hydrophobic, 110 - D PHE 486 CE2 VS F ALA 61 CB Distance: 4.934982 - Hydrophobic, 111 - D PHE 486 CZ VS F ALA 61 CB Distance: 4.200863 - Hydrophobic, 112 - D TYR 489 CD2 VS F ALA 33 CB Distance: 5.278627 - Hydrophobic, 113 - D TYR 489 CE2 VS F ALA 33 CB Distance: 5.498195 - Hydrophobic, 114 - D TYR 489 CD2 VS F ASP 99 CB Distance: 4.517694 - Hydrophobic, 115 - D TYR 489 CE2 VS F ASP 99 CB Distance: 3.729313 - Hydrophobic, 116 - D TYR 489 OH VS F ASP 99 O Distance: 2.867538 - Hydrogen Bonds, 117 - D TYR 489 CB VS F PRO 100 CB Distance: 5.350823 - Hydrophobic, 118 - D TYR 489 CB VS F PRO 100 CG Distance: 5.415544 - Hydrophobic, 119 - D TYR 489 CG VS F PRO 100 CB Distance: 4.463953 - Hydrophobic, 120 - D TYR 489 CG VS F PRO 100 CG Distance: 4.763927 - Hydrophobic, 121 - D TYR 489 CD1 VS F PRO 100 CB Distance: 4.689446 - Hydrophobic, 122 - D TYR 489 CD1 VS F PRO 100 CG Distance: 5.379630 - Hydrophobic, 123 - D TYR 489 CD2 VS F PRO 100 CB Distance: 3.958076 - Hydrophobic, 124 - D TYR 489 CD2 VS F PRO 100 CG Distance: 4.025996 - Hydrophobic, 125 - D TYR 489 CE1 VS F PRO 100 CB Distance: 4.426567 - Hydrophobic, 126 - D TYR 489 CE1 VS F PRO 100 CG Distance: 5.328940 - Hydrophobic, 127 - D TYR 489 CE2 VS F PRO 100 CB Distance: 3.649267 - Hydrophobic, 128 - D TYR 489 CE2 VS F PRO 100 CG Distance: 3.966421 - Hydrophobic, 129 - D PHE 490 O VS F ASN 32 ND2 Distance: 2.938427 - Hydrogen Bonds, 130 - D PHE 490 CB VS F ASN 32 CB Distance: 4.486169 - Hydrophobic, 131 - D PHE 490 CG VS F ASN 32 CB Distance: 5.278398 - Hydrophobic, 132 - D PHE 490 CD2 VS F ASN 32 CB Distance: 4.987229 - Hydrophobic, 133 - D LEU 492 O VS F ASN 32 N Distance: 4.704480 - Hydrogen Bonds, 134 - D GLN 493 CB VS F ARG 31 CB Distance: 5.327253 - Hydrophobic, 135 - D GLN 493 CB VS F ARG 31 CG Distance: 5.325621 - Hydrophobic, 136 - D GLN 493 CG VS F ARG 31 CB Distance: 5.389085 - Hydrophobic, 137 - D GLN 493 CG VS F ARG 31 CG Distance: 5.441648 - Hydrophobic, 138 - D GLN 493 OE1 VS F ARG 31 N Distance: 4.666594 - Hydrogen Bonds, 139 - D GLN 493 OE1 VS F ARG 31 NE Distance: 3.070206 - Hydrogen Bonds, 140 - D GLN 493 OE1 VS F ARG 31 NH2 Distance: 4.793870 - Hydrogen Bonds, 141 - D GLN 493 CG VS F ASN 32 CB Distance: 5.423840 - Hydrophobic, 142 - D GLN 493 OE1 VS F ASN 32 N Distance: 2.907140 - Hydrogen Bonds, 143 - D GLN 493 OE1 VS F ASN 32 ND2 Distance: 3.948440 - Hydrogen Bonds, 144 - D GLN 493 NE2 VS F ASN 32 OD1 Distance: 4.182459 - Hydrogen Bonds, 145 - D SER 494 N VS F GLY 30 O Distance: 2.935780 - Hydrogen Bonds, 146 - D SER 494 OG VS F GLY 30 O Distance: 3.911102 - Hydrogen Bonds, 147 - D SER 494 O VS F ARG 31 N Distance: 4.699290 - Hydrogen Bonds, 148 - D SER 494 OG VS F ARG 53 NE Distance: 4.317486 - Hydrogen Bonds, 149 - D TYR 495 O VS F TYR 27 N Distance: 3.477670 - Hydrogen Bonds, 150 - D TYR 495 CB VS F TYR 27 CD1 Distance: 5.450839 - Hydrophobic, 151 - D TYR 495 CD2 VS F TYR 27 CD1 Distance: 4.839825 - Hydrophobic, 152 - D TYR 495 CD2 VS F TYR 27 CE1 Distance: 4.647398 - Hydrophobic, 153 - D TYR 495 CE2 VS F TYR 27 CE1 Distance: 5.117577 - Hydrophobic, 154 - D GLY 496 N VS F GLY 26 O Distance: 4.414397 - Hydrogen Bonds, 155 - D GLY 496 O VS F GLY 26 N Distance: 4.282370 - Hydrogen Bonds, 156 - D GLY 496 O VS F TYR 27 N Distance: 4.079571 - Hydrogen Bonds, 157 - D GLN 498 OE1 VS F GLY 26 N Distance: 2.865267 - Hydrogen Bonds, 158 - D GLN 498 OE1 VS F TYR 27 N Distance: 4.865080 - Hydrogen Bonds, 159 - D TYR 505 CE1 VS F GLN 3 CG Distance: 5.444415 - Hydrophobic, 160 - D TYR 505 CE2 VS F GLN 3 CG Distance: 5.188110 - Hydrophobic, 161 - D TYR 505 OH VS F GLN 3 NE2 Distance: 4.445805 - Hydrogen Bonds, 162 - D TYR 505 CG VS F TYR 27 CB Distance: 5.450203 - Hydrophobic, 163 - D TYR 505 CG VS F TYR 27 CG Distance: 5.361273 - Hydrophobic, 164 - D TYR 505 CG VS F TYR 27 CG Distance: 5.076601 - Aromatic Stacking, 165 - D TYR 505 CG VS F TYR 27 CD1 Distance: 5.335512 - Hydrophobic, 166 - D TYR 505 CD2 VS F TYR 27 CB Distance: 4.253754 - Hydrophobic, 167 - D TYR 505 CD2 VS F TYR 27 CG Distance: 4.014190 - Hydrophobic, 168 - D TYR 505 CD2 VS F TYR 27 CD1 Distance: 4.029245 - Hydrophobic, 169 - D TYR 505 CD2 VS F TYR 27 CD2 Distance: 4.459216 - Hydrophobic, 170 - D TYR 505 CD2 VS F TYR 27 CE1 Distance: 4.487632 - Hydrophobic, 171 - D TYR 505 CD2 VS F TYR 27 CE2 Distance: 4.873578 - Hydrophobic, 172 - D TYR 505 CE2 VS F TYR 27 CB Distance: 4.343202 - Hydrophobic, 173 - D TYR 505 CE2 VS F TYR 27 CG Distance: 3.799050 - Hydrophobic, 174 - D TYR 505 CE2 VS F TYR 27 CD1 Distance: 4.000628 - Hydrophobic, 175 - D TYR 505 CE2 VS F TYR 27 CD2 Distance: 3.815256 - Hydrophobic, 176 - D TYR 505 CE2 VS F TYR 27 CE1 Distance: 4.207879 - Hydrophobic, 177 - D TYR 505 CE2 VS F TYR 27 CE2 Distance: 4.026620 - Hydrophobic,