VIRAL PROTEIN/IMMUNE SYSTEM SARS-COV-2 SPIKE IN COMPLEX WITH NEUTRALIZING NANOBODY MNB6: 0 - C ARG 403 CB VS E TYR 27 CE1 Distance: 5.482670 - Hydrophobic, 1 - C ARG 403 CG VS E TYR 27 CD1 Distance: 5.413539 - Hydrophobic, 2 - C ARG 403 CG VS E TYR 27 CE1 Distance: 5.110742 - Hydrophobic, 3 - C ARG 403 NE VS E TYR 27 OH Distance: 3.893674 - Hydrogen Bonds, 4 - C ARG 403 NH2 VS E TYR 27 OH Distance: 3.792422 - Hydrogen Bonds, 5 - C LYS 417 NZ VS E ALA 104 O Distance: 3.892170 - Hydrogen Bonds, 6 - C LYS 417 CG VS E TYR 105 CD1 Distance: 5.481696 - Hydrophobic, 7 - C LYS 417 CD VS E TYR 105 CD1 Distance: 4.929527 - Hydrophobic, 8 - C LYS 417 CD VS E TYR 105 CE1 Distance: 5.281318 - Hydrophobic, 9 - C GLY 446 O VS E ASN 77 ND2 Distance: 3.080732 - Hydrogen Bonds, 10 - C TYR 449 OH VS E GLY 26 N Distance: 4.297955 - Hydrogen Bonds, 11 - C TYR 449 OH VS E GLY 26 O Distance: 4.397758 - Hydrogen Bonds, 12 - C TYR 449 CG VS E PHE 29 CG Distance: 6.696190 - Aromatic Stacking, 13 - C TYR 449 CE1 VS E PHE 29 CD1 Distance: 5.401158 - Hydrophobic, 14 - C TYR 449 CE2 VS E PHE 29 CB Distance: 4.722309 - Hydrophobic, 15 - C TYR 449 CE2 VS E PHE 29 CG Distance: 5.179662 - Hydrophobic, 16 - C TYR 449 CE2 VS E PHE 29 CD1 Distance: 4.599376 - Hydrophobic, 17 - C TYR 449 OH VS E ASN 77 OD1 Distance: 3.263731 - Hydrogen Bonds, 18 - C TYR 449 OH VS E ASN 77 ND2 Distance: 3.387310 - Hydrogen Bonds, 19 - C TYR 453 CG VS E TYR 27 CD1 Distance: 6.763631 - Aromatic Stacking, 20 - C TYR 453 CE2 VS E TYR 27 CE1 Distance: 5.008238 - Hydrophobic, 21 - C TYR 453 OH VS E TYR 27 O Distance: 4.767948 - Hydrogen Bonds, 22 - C TYR 453 OH VS E TYR 27 OH Distance: 4.069756 - Hydrogen Bonds, 23 - C LEU 455 CD2 VS E PRO 100 CG Distance: 5.124020 - Hydrophobic, 24 - C LEU 455 CB VS E TYR 105 CD1 Distance: 5.086684 - Hydrophobic, 25 - C LEU 455 CB VS E TYR 105 CE1 Distance: 5.150973 - Hydrophobic, 26 - C LEU 455 CG VS E TYR 105 CB Distance: 4.614061 - Hydrophobic, 27 - C LEU 455 CG VS E TYR 105 CG Distance: 4.149956 - Hydrophobic, 28 - C LEU 455 CG VS E TYR 105 CD1 Distance: 3.624369 - Hydrophobic, 29 - C LEU 455 CG VS E TYR 105 CD2 Distance: 4.807355 - Hydrophobic, 30 - C LEU 455 CG VS E TYR 105 CE1 Distance: 3.880364 - Hydrophobic, 31 - C LEU 455 CG VS E TYR 105 CE2 Distance: 5.015013 - Hydrophobic, 32 - C LEU 455 CD1 VS E TYR 105 CB Distance: 4.144077 - Hydrophobic, 33 - C LEU 455 CD1 VS E TYR 105 CG Distance: 4.096602 - Hydrophobic, 34 - C LEU 455 CD1 VS E TYR 105 CD1 Distance: 3.586056 - Hydrophobic, 35 - C LEU 455 CD1 VS E TYR 105 CD2 Distance: 5.092108 - Hydrophobic, 36 - C LEU 455 CD1 VS E TYR 105 CE1 Distance: 4.258430 - Hydrophobic, 37 - C LEU 455 CD2 VS E TYR 105 CB Distance: 4.298451 - Hydrophobic, 38 - C LEU 455 CD2 VS E TYR 105 CG Distance: 3.911339 - Hydrophobic, 39 - C LEU 455 CD2 VS E TYR 105 CD1 Distance: 3.868649 - Hydrophobic, 40 - C LEU 455 CD2 VS E TYR 105 CD2 Distance: 4.260730 - Hydrophobic, 41 - C LEU 455 CD2 VS E TYR 105 CE1 Distance: 4.205681 - Hydrophobic, 42 - C LEU 455 CD2 VS E TYR 105 CE2 Distance: 4.576299 - Hydrophobic, 43 - C PHE 456 CD2 VS E PRO 100 CB Distance: 5.494237 - Hydrophobic, 44 - C PHE 456 CE2 VS E PRO 100 CB Distance: 4.788000 - Hydrophobic, 45 - C PHE 456 CE2 VS E PRO 100 CG Distance: 4.802052 - Hydrophobic, 46 - C PHE 456 CZ VS E PRO 100 CB Distance: 5.266370 - Hydrophobic, 47 - C PHE 456 CZ VS E PRO 100 CG Distance: 5.282107 - Hydrophobic, 48 - C PHE 456 CB VS E TYR 105 CE1 Distance: 4.862486 - Hydrophobic, 49 - C PHE 456 CG VS E TYR 105 CG Distance: 6.289077 - Aromatic Stacking, 50 - C PHE 456 CG VS E TYR 105 CE1 Distance: 5.186008 - Hydrophobic, 51 - C PHE 456 CD2 VS E TYR 105 CD1 Distance: 5.357126 - Hydrophobic, 52 - C PHE 456 CD2 VS E TYR 105 CE1 Distance: 4.517483 - Hydrophobic, 53 - C PHE 456 CD2 VS E TYR 105 CE2 Distance: 5.214700 - Hydrophobic, 54 - C PHE 456 CE2 VS E TYR 105 CE1 Distance: 5.312200 - Hydrophobic, 55 - C PHE 456 CE2 VS E TYR 105 CE2 Distance: 5.494735 - Hydrophobic, 56 - C VAL 483 CG1 VS E ILE 57 CG2 Distance: 5.094106 - Hydrophobic, 57 - C VAL 483 CG1 VS E ILE 57 CD1 Distance: 5.023015 - Hydrophobic, 58 - C GLU 484 OE1 VS E ASN 32 ND2 Distance: 4.543570 - Hydrogen Bonds, 59 - C GLU 484 CB VS E THR 52 CG2 Distance: 3.788176 - Hydrophobic, 60 - C GLU 484 CG VS E THR 52 CG2 Distance: 4.456345 - Hydrophobic, 61 - C GLU 484 OE2 VS E THR 52 OG1 Distance: 4.199631 - Hydrogen Bonds, 62 - C GLU 484 OE1 VS E ARG 54 NE Distance: 6.052347 - Attractive, 63 - C GLU 484 OE1 VS E ARG 54 CZ Distance: 6.145045 - Attractive, 64 - C GLU 484 OE1 VS E ARG 54 NH2 Distance: 5.642067 - Attractive, 65 - C GLU 484 OE2 VS E ARG 54 NE Distance: 4.579462 - Attractive, Hydrogen Bonds, 66 - C GLU 484 OE2 VS E ARG 54 CZ Distance: 4.969267 - Attractive, 67 - C GLU 484 OE2 VS E ARG 54 NH1 Distance: 6.124079 - Attractive, 68 - C GLU 484 OE2 VS E ARG 54 NH2 Distance: 4.566053 - Attractive, Hydrogen Bonds, 69 - C GLU 484 CB VS E ILE 57 CB Distance: 5.289144 - Hydrophobic, 70 - C GLU 484 CB VS E ILE 57 CG2 Distance: 5.102302 - Hydrophobic, 71 - C GLU 484 CB VS E ILE 57 CD1 Distance: 4.575439 - Hydrophobic, 72 - C GLU 484 CG VS E ILE 57 CD1 Distance: 5.145806 - Hydrophobic, 73 - C GLY 485 O VS E TYR 59 OH Distance: 4.164527 - Hydrogen Bonds, 74 - C PHE 486 CG VS E LEU 47 CD2 Distance: 5.156682 - Hydrophobic, 75 - C PHE 486 CD2 VS E LEU 47 CB Distance: 5.039565 - Hydrophobic, 76 - C PHE 486 CD2 VS E LEU 47 CG Distance: 4.811955 - Hydrophobic, 77 - C PHE 486 CD2 VS E LEU 47 CD2 Distance: 4.005982 - Hydrophobic, 78 - C PHE 486 CE2 VS E LEU 47 CB Distance: 4.359837 - Hydrophobic, 79 - C PHE 486 CE2 VS E LEU 47 CG Distance: 4.147475 - Hydrophobic, 80 - C PHE 486 CE2 VS E LEU 47 CD2 Distance: 3.758959 - Hydrophobic, 81 - C PHE 486 CZ VS E LEU 47 CB Distance: 5.279215 - Hydrophobic, 82 - C PHE 486 CZ VS E LEU 47 CG Distance: 4.942634 - Hydrophobic, 83 - C PHE 486 CZ VS E LEU 47 CD2 Distance: 4.750931 - Hydrophobic, 84 - C PHE 486 N VS E TYR 59 OH Distance: 4.611762 - Hydrogen Bonds, 85 - C PHE 486 CB VS E TYR 59 CD1 Distance: 4.677397 - Hydrophobic, 86 - C PHE 486 CB VS E TYR 59 CE1 Distance: 4.520986 - Hydrophobic, 87 - C PHE 486 CG VS E TYR 59 CG Distance: 4.935239 - Hydrophobic, 88 - C PHE 486 CG VS E TYR 59 CG Distance: 4.637913 - Aromatic Stacking, 89 - C PHE 486 CG VS E TYR 59 CD1 Distance: 3.871224 - Hydrophobic, 90 - C PHE 486 CG VS E TYR 59 CE1 Distance: 3.809274 - Hydrophobic, 91 - C PHE 486 CD1 VS E TYR 59 CB Distance: 4.755863 - Hydrophobic, 92 - C PHE 486 CD1 VS E TYR 59 CG Distance: 4.519476 - Hydrophobic, 93 - C PHE 486 CD1 VS E TYR 59 CD1 Distance: 3.573925 - Hydrophobic, 94 - C PHE 486 CD1 VS E TYR 59 CE1 Distance: 3.974285 - Hydrophobic, 95 - C PHE 486 CD2 VS E TYR 59 CG Distance: 5.352477 - Hydrophobic, 96 - C PHE 486 CD2 VS E TYR 59 CD1 Distance: 4.107020 - Hydrophobic, 97 - C PHE 486 CD2 VS E TYR 59 CE1 Distance: 3.714748 - Hydrophobic, 98 - C PHE 486 CE1 VS E TYR 59 CB Distance: 4.697001 - Hydrophobic, 99 - C PHE 486 CE1 VS E TYR 59 CG Distance: 4.565925 - Hydrophobic, 100 - C PHE 486 CE1 VS E TYR 59 CD1 Distance: 3.538476 - Hydrophobic, 101 - C PHE 486 CE1 VS E TYR 59 CE1 Distance: 4.050907 - Hydrophobic, 102 - C PHE 486 CE2 VS E TYR 59 CG Distance: 5.388120 - Hydrophobic, 103 - C PHE 486 CE2 VS E TYR 59 CD1 Distance: 4.073860 - Hydrophobic, 104 - C PHE 486 CE2 VS E TYR 59 CE1 Distance: 3.796787 - Hydrophobic, 105 - C PHE 486 CZ VS E TYR 59 CB Distance: 5.403161 - Hydrophobic, 106 - C PHE 486 CZ VS E TYR 59 CG Distance: 5.011062 - Hydrophobic, 107 - C PHE 486 CZ VS E TYR 59 CD1 Distance: 3.795106 - Hydrophobic, 108 - C PHE 486 CZ VS E TYR 59 CE1 Distance: 3.958050 - Hydrophobic, 109 - C PHE 486 CE1 VS E ALA 61 CB Distance: 4.940658 - Hydrophobic, 110 - C PHE 486 CE2 VS E ALA 61 CB Distance: 4.936089 - Hydrophobic, 111 - C PHE 486 CZ VS E ALA 61 CB Distance: 4.173648 - Hydrophobic, 112 - C TYR 489 CD2 VS E ALA 33 CB Distance: 5.266761 - Hydrophobic, 113 - C TYR 489 CE2 VS E ALA 33 CB Distance: 5.491108 - Hydrophobic, 114 - C TYR 489 CD2 VS E ASP 99 CB Distance: 4.515132 - Hydrophobic, 115 - C TYR 489 CE2 VS E ASP 99 CB Distance: 3.730553 - Hydrophobic, 116 - C TYR 489 OH VS E ASP 99 O Distance: 2.868573 - Hydrogen Bonds, 117 - C TYR 489 CB VS E PRO 100 CB Distance: 5.322301 - Hydrophobic, 118 - C TYR 489 CB VS E PRO 100 CG Distance: 5.399432 - Hydrophobic, 119 - C TYR 489 CG VS E PRO 100 CB Distance: 4.440982 - Hydrophobic, 120 - C TYR 489 CG VS E PRO 100 CG Distance: 4.754398 - Hydrophobic, 121 - C TYR 489 CD1 VS E PRO 100 CB Distance: 4.667572 - Hydrophobic, 122 - C TYR 489 CD1 VS E PRO 100 CG Distance: 5.370305 - Hydrophobic, 123 - C TYR 489 CD2 VS E PRO 100 CB Distance: 3.944520 - Hydrophobic, 124 - C TYR 489 CD2 VS E PRO 100 CG Distance: 4.024497 - Hydrophobic, 125 - C TYR 489 CE1 VS E PRO 100 CB Distance: 4.412689 - Hydrophobic, 126 - C TYR 489 CE1 VS E PRO 100 CG Distance: 5.325224 - Hydrophobic, 127 - C TYR 489 CE2 VS E PRO 100 CB Distance: 3.647120 - Hydrophobic, 128 - C TYR 489 CE2 VS E PRO 100 CG Distance: 3.974543 - Hydrophobic, 129 - C PHE 490 O VS E ASN 32 ND2 Distance: 2.939534 - Hydrogen Bonds, 130 - C PHE 490 CB VS E ASN 32 CB Distance: 4.440660 - Hydrophobic, 131 - C PHE 490 CG VS E ASN 32 CB Distance: 5.261922 - Hydrophobic, 132 - C PHE 490 CD2 VS E ASN 32 CB Distance: 5.012673 - Hydrophobic, 133 - C LEU 492 O VS E ASN 32 N Distance: 4.703909 - Hydrogen Bonds, 134 - C GLN 493 CB VS E ARG 31 CB Distance: 5.422290 - Hydrophobic, 135 - C GLN 493 CB VS E ARG 31 CG Distance: 5.397530 - Hydrophobic, 136 - C GLN 493 CG VS E ARG 31 CB Distance: 5.483563 - Hydrophobic, 137 - C GLN 493 OE1 VS E ARG 31 N Distance: 4.531983 - Hydrogen Bonds, 138 - C GLN 493 OE1 VS E ARG 31 NE Distance: 3.485363 - Hydrogen Bonds, 139 - C GLN 493 CG VS E ASN 32 CB Distance: 5.468604 - Hydrophobic, 140 - C GLN 493 OE1 VS E ASN 32 N Distance: 2.825447 - Hydrogen Bonds, 141 - C GLN 493 OE1 VS E ASN 32 ND2 Distance: 3.994262 - Hydrogen Bonds, 142 - C GLN 493 NE2 VS E ASN 32 OD1 Distance: 4.254762 - Hydrogen Bonds, 143 - C SER 494 N VS E GLY 30 O Distance: 2.962746 - Hydrogen Bonds, 144 - C SER 494 OG VS E GLY 30 O Distance: 3.928596 - Hydrogen Bonds, 145 - C SER 494 O VS E ARG 31 N Distance: 4.730358 - Hydrogen Bonds, 146 - C SER 494 OG VS E ARG 53 NE Distance: 4.324961 - Hydrogen Bonds, 147 - C TYR 495 O VS E TYR 27 N Distance: 3.461639 - Hydrogen Bonds, 148 - C TYR 495 CB VS E TYR 27 CD1 Distance: 5.455300 - Hydrophobic, 149 - C TYR 495 CD2 VS E TYR 27 CD1 Distance: 4.833963 - Hydrophobic, 150 - C TYR 495 CD2 VS E TYR 27 CE1 Distance: 4.649114 - Hydrophobic, 151 - C TYR 495 CE2 VS E TYR 27 CE1 Distance: 5.112669 - Hydrophobic, 152 - C GLY 496 N VS E GLY 26 O Distance: 4.416755 - Hydrogen Bonds, 153 - C GLY 496 O VS E GLY 26 N Distance: 4.261186 - Hydrogen Bonds, 154 - C GLY 496 O VS E TYR 27 N Distance: 4.076439 - Hydrogen Bonds, 155 - C GLN 498 OE1 VS E GLY 26 N Distance: 2.869391 - Hydrogen Bonds, 156 - C GLN 498 OE1 VS E TYR 27 N Distance: 4.878126 - Hydrogen Bonds, 157 - C TYR 505 CE1 VS E GLN 3 CG Distance: 5.466573 - Hydrophobic, 158 - C TYR 505 CE2 VS E GLN 3 CG Distance: 5.213511 - Hydrophobic, 159 - C TYR 505 OH VS E GLN 3 NE2 Distance: 4.464860 - Hydrogen Bonds, 160 - C TYR 505 CG VS E TYR 27 CB Distance: 5.460635 - Hydrophobic, 161 - C TYR 505 CG VS E TYR 27 CG Distance: 5.365118 - Hydrophobic, 162 - C TYR 505 CG VS E TYR 27 CG Distance: 5.075926 - Aromatic Stacking, 163 - C TYR 505 CG VS E TYR 27 CD1 Distance: 5.341021 - Hydrophobic, 164 - C TYR 505 CD2 VS E TYR 27 CB Distance: 4.264448 - Hydrophobic, 165 - C TYR 505 CD2 VS E TYR 27 CG Distance: 4.018302 - Hydrophobic, 166 - C TYR 505 CD2 VS E TYR 27 CD1 Distance: 4.035624 - Hydrophobic, 167 - C TYR 505 CD2 VS E TYR 27 CD2 Distance: 4.453843 - Hydrophobic, 168 - C TYR 505 CD2 VS E TYR 27 CE1 Distance: 4.487740 - Hydrophobic, 169 - C TYR 505 CD2 VS E TYR 27 CE2 Distance: 4.861758 - Hydrophobic, 170 - C TYR 505 CE2 VS E TYR 27 CB Distance: 4.356386 - Hydrophobic, 171 - C TYR 505 CE2 VS E TYR 27 CG Distance: 3.807441 - Hydrophobic, 172 - C TYR 505 CE2 VS E TYR 27 CD1 Distance: 4.011134 - Hydrophobic, 173 - C TYR 505 CE2 VS E TYR 27 CD2 Distance: 3.813580 - Hydrophobic, 174 - C TYR 505 CE2 VS E TYR 27 CE1 Distance: 4.213048 - Hydrophobic, 175 - C TYR 505 CE2 VS E TYR 27 CE2 Distance: 4.017797 - Hydrophobic,