VIRAL PROTEIN/ANTIVIRAL PROTEIN CRYSTAL STRUCTURE OF SARS-COV-2 RBD IN COMPLEX WITH A NEUTRALIZING ANTIBODY SCFV: 0 - A VAL 2 CB VS B PHE 486 CE1 Distance: 5.296191 - Hydrophobic, 1 - A VAL 2 CG2 VS B PHE 486 CD1 Distance: 4.260188 - Hydrophobic, 2 - A VAL 2 CG2 VS B PHE 486 CE1 Distance: 3.841928 - Hydrophobic, 3 - A VAL 2 CG2 VS B PHE 486 CZ Distance: 4.965106 - Hydrophobic, 4 - A PHE 27 CB VS B PHE 486 CD1 Distance: 4.902232 - Hydrophobic, 5 - A PHE 27 CB VS B PHE 486 CE1 Distance: 3.876012 - Hydrophobic, 6 - A PHE 27 CB VS B PHE 486 CE2 Distance: 5.443662 - Hydrophobic, 7 - A PHE 27 CB VS B PHE 486 CZ Distance: 4.236659 - Hydrophobic, 8 - A PHE 27 CG VS B PHE 486 CE1 Distance: 5.108056 - Hydrophobic, 9 - A THR 28 OG1 VS B ASN 487 OD1 Distance: 4.573737 - Hydrogen Bonds, 10 - A THR 28 OG1 VS B TYR 489 OH Distance: 4.468636 - Hydrogen Bonds, 11 - A TYR 31 CB VS B PHE 456 CE1 Distance: 4.959371 - Hydrophobic, 12 - A TYR 31 CB VS B PHE 456 CZ Distance: 4.538042 - Hydrophobic, 13 - A TYR 31 CG VS B PHE 456 CG Distance: 5.066094 - Aromatic Stacking, 14 - A TYR 31 CG VS B PHE 456 CD1 Distance: 5.430946 - Hydrophobic, 15 - A TYR 31 CG VS B PHE 456 CE1 Distance: 4.110183 - Hydrophobic, 16 - A TYR 31 CG VS B PHE 456 CE2 Distance: 5.429066 - Hydrophobic, 17 - A TYR 31 CG VS B PHE 456 CZ Distance: 4.108110 - Hydrophobic, 18 - A TYR 31 CD1 VS B PHE 456 CE1 Distance: 4.292185 - Hydrophobic, 19 - A TYR 31 CD1 VS B PHE 456 CZ Distance: 4.514570 - Hydrophobic, 20 - A TYR 31 CD2 VS B PHE 456 CD1 Distance: 4.983698 - Hydrophobic, 21 - A TYR 31 CD2 VS B PHE 456 CE1 Distance: 3.775576 - Hydrophobic, 22 - A TYR 31 CD2 VS B PHE 456 CE2 Distance: 5.332301 - Hydrophobic, 23 - A TYR 31 CD2 VS B PHE 456 CZ Distance: 4.005148 - Hydrophobic, 24 - A TYR 31 CE1 VS B PHE 456 CD1 Distance: 5.162940 - Hydrophobic, 25 - A TYR 31 CE1 VS B PHE 456 CE1 Distance: 4.181441 - Hydrophobic, 26 - A TYR 31 CE1 VS B PHE 456 CZ Distance: 4.803371 - Hydrophobic, 27 - A TYR 31 CE2 VS B PHE 456 CD1 Distance: 4.605838 - Hydrophobic, 28 - A TYR 31 CE2 VS B PHE 456 CE1 Distance: 3.648696 - Hydrophobic, 29 - A TYR 31 CE2 VS B PHE 456 CZ Distance: 4.328956 - Hydrophobic, 30 - A TYR 31 CE2 VS B ALA 475 CB Distance: 5.245855 - Hydrophobic, 31 - A TYR 31 CB VS B TYR 489 CD2 Distance: 5.305596 - Hydrophobic, 32 - A TYR 31 CB VS B TYR 489 CE1 Distance: 5.317762 - Hydrophobic, 33 - A TYR 31 CB VS B TYR 489 CE2 Distance: 4.719981 - Hydrophobic, 34 - A TYR 31 CG VS B TYR 489 CG Distance: 5.803951 - Aromatic Stacking, 35 - A TYR 31 CG VS B TYR 489 CD2 Distance: 5.147866 - Hydrophobic, 36 - A TYR 31 CG VS B TYR 489 CE2 Distance: 4.524192 - Hydrophobic, 37 - A TYR 31 CD2 VS B TYR 489 CG Distance: 5.378257 - Hydrophobic, 38 - A TYR 31 CD2 VS B TYR 489 CD2 Distance: 4.315047 - Hydrophobic, 39 - A TYR 31 CD2 VS B TYR 489 CE1 Distance: 5.160279 - Hydrophobic, 40 - A TYR 31 CD2 VS B TYR 489 CE2 Distance: 3.527886 - Hydrophobic, 41 - A TYR 31 CE2 VS B TYR 489 CD2 Distance: 4.809518 - Hydrophobic, 42 - A TYR 31 CE2 VS B TYR 489 CE2 Distance: 4.094196 - Hydrophobic, 43 - A TYR 32 OH VS B GLY 485 O Distance: 4.886672 - Hydrogen Bonds, 44 - A TYR 32 CG VS B TYR 489 CG Distance: 5.968640 - Aromatic Stacking, 45 - A TYR 32 CD1 VS B TYR 489 CE1 Distance: 5.145120 - Hydrophobic, 46 - A TYR 32 CE1 VS B TYR 489 CD1 Distance: 5.197622 - Hydrophobic, 47 - A TYR 32 CE1 VS B TYR 489 CE1 Distance: 4.116337 - Hydrophobic, 48 - A TYR 32 CE1 VS B TYR 489 CE2 Distance: 5.420033 - Hydrophobic, 49 - A TYR 32 CE2 VS B TYR 489 CE1 Distance: 5.020635 - Hydrophobic, 50 - A TYR 32 OH VS B TYR 489 OH Distance: 3.867916 - Hydrogen Bonds, 51 - A TRP 52 CZ2 VS B TYR 449 CD1 Distance: 4.860998 - Hydrophobic, 52 - A TRP 52 CZ2 VS B TYR 449 CE1 Distance: 4.366157 - Hydrophobic, 53 - A TRP 52 CZ3 VS B TYR 449 CE1 Distance: 5.169882 - Hydrophobic, 54 - A TRP 52 CH2 VS B TYR 449 CD1 Distance: 4.841845 - Hydrophobic, 55 - A TRP 52 CH2 VS B TYR 449 CE1 Distance: 4.007169 - Hydrophobic, 56 - A TRP 52 NE1 VS B TYR 453 OH Distance: 4.730425 - Hydrogen Bonds, 57 - A TRP 52 NE1 VS B SER 494 O Distance: 3.179592 - Hydrogen Bonds, 58 - A TRP 52 NE1 VS B TYR 495 O Distance: 3.369013 - Hydrogen Bonds, 59 - A TYR 53 OH VS B LYS 417 NZ Distance: 3.642151 - Hydrogen Bonds, 60 - A TYR 53 CG VS B TYR 453 CE1 Distance: 6.911195 - Aromatic Stacking, 61 - A TYR 53 CE1 VS B TYR 453 CE1 Distance: 4.987422 - Hydrophobic, 62 - A TYR 53 OH VS B TYR 453 OH Distance: 3.299697 - Hydrogen Bonds, 63 - A TYR 53 CG VS B LEU 455 CD2 Distance: 4.923196 - Hydrophobic, 64 - A TYR 53 CD1 VS B LEU 455 CD2 Distance: 4.876255 - Hydrophobic, 65 - A TYR 53 CD2 VS B LEU 455 CG Distance: 5.391466 - Hydrophobic, 66 - A TYR 53 CD2 VS B LEU 455 CD1 Distance: 5.046170 - Hydrophobic, 67 - A TYR 53 CD2 VS B LEU 455 CD2 Distance: 4.593238 - Hydrophobic, 68 - A TYR 53 CE1 VS B LEU 455 CG Distance: 5.412541 - Hydrophobic, 69 - A TYR 53 CE1 VS B LEU 455 CD1 Distance: 4.878007 - Hydrophobic, 70 - A TYR 53 CE1 VS B LEU 455 CD2 Distance: 4.538889 - Hydrophobic, 71 - A TYR 53 CE2 VS B LEU 455 CG Distance: 4.735942 - Hydrophobic, 72 - A TYR 53 CE2 VS B LEU 455 CD1 Distance: 4.060522 - Hydrophobic, 73 - A TYR 53 CE2 VS B LEU 455 CD2 Distance: 4.224081 - Hydrophobic, 74 - A TYR 53 CD1 VS B GLN 493 CG Distance: 5.211392 - Hydrophobic, 75 - A TYR 53 CE1 VS B GLN 493 CG Distance: 4.883915 - Hydrophobic, 76 - A ASP 54 OD1 VS B ARG 403 NE Distance: 6.628485 - Attractive, 77 - A ASP 54 OD1 VS B ARG 403 CZ Distance: 5.397632 - Attractive, 78 - A ASP 54 OD1 VS B ARG 403 NH1 Distance: 4.429018 - Attractive, Hydrogen Bonds, 79 - A ASP 54 OD1 VS B ARG 403 NH2 Distance: 5.403348 - Attractive, 80 - A ASP 54 OD2 VS B ARG 403 NE Distance: 5.330632 - Attractive, 81 - A ASP 54 OD2 VS B ARG 403 CZ Distance: 4.056743 - Attractive, 82 - A ASP 54 OD2 VS B ARG 403 NH1 Distance: 3.229493 - Attractive, Hydrogen Bonds, 83 - A ASP 54 OD2 VS B ARG 403 NH2 Distance: 3.984701 - Attractive, Hydrogen Bonds, 84 - A ASP 54 OD2 VS B ASP 405 OD2 Distance: 6.979460 - Repulsive, 85 - A ASP 54 OD2 VS B GLU 406 OE2 Distance: 6.639774 - Repulsive, 86 - A ASP 54 OD2 VS B LYS 417 NZ Distance: 5.469778 - Attractive, 87 - A SER 56 OG VS B ARG 403 NH1 Distance: 3.468291 - Hydrogen Bonds, 88 - A SER 56 O VS B ASN 501 ND2 Distance: 4.823557 - Hydrogen Bonds, 89 - A SER 56 N VS B TYR 505 OH Distance: 4.818930 - Hydrogen Bonds, 90 - A ASN 57 ND2 VS B TYR 495 O Distance: 3.046910 - Hydrogen Bonds, 91 - A ASN 57 ND2 VS B GLY 496 O Distance: 2.803904 - Hydrogen Bonds, 92 - A ASN 57 OD1 VS B GLN 498 NE2 Distance: 3.366890 - Hydrogen Bonds, 93 - A ASN 57 OD1 VS B ASN 501 ND2 Distance: 3.401850 - Hydrogen Bonds, 94 - A ARG 58 O VS B GLN 498 NE2 Distance: 3.136394 - Hydrogen Bonds, 95 - A PHE 59 CG VS B TYR 449 CD1 Distance: 6.611916 - Aromatic Stacking, 96 - A PHE 59 CE1 VS B TYR 449 CE1 Distance: 5.102776 - Hydrophobic, 97 - A PHE 59 CZ VS B TYR 449 CE1 Distance: 5.148153 - Hydrophobic, 98 - A PHE 59 CD2 VS B GLN 498 CB Distance: 5.363157 - Hydrophobic, 99 - A PHE 59 CD2 VS B GLN 498 CG Distance: 5.170188 - Hydrophobic, 100 - A PHE 59 CE1 VS B GLN 498 CB Distance: 5.097789 - Hydrophobic, 101 - A PHE 59 CE2 VS B GLN 498 CB Distance: 4.221340 - Hydrophobic, 102 - A PHE 59 CE2 VS B GLN 498 CG Distance: 4.306595 - Hydrophobic, 103 - A PHE 59 CZ VS B GLN 498 CB Distance: 4.057941 - Hydrophobic, 104 - A PHE 59 CZ VS B GLN 498 CG Distance: 4.516744 - Hydrophobic, 105 - A PRO 100 CB VS B TYR 489 CD1 Distance: 5.274241 - Hydrophobic, 106 - A PRO 101 CB VS B LEU 455 CG Distance: 5.490062 - Hydrophobic, 107 - A PRO 101 CB VS B LEU 455 CD2 Distance: 4.440129 - Hydrophobic, 108 - A PRO 101 CG VS B LEU 455 CD2 Distance: 4.781038 - Hydrophobic, 109 - A PRO 101 CB VS B PHE 456 CD2 Distance: 5.104810 - Hydrophobic, 110 - A PRO 101 CB VS B PHE 456 CE2 Distance: 3.976863 - Hydrophobic, 111 - A PRO 101 CB VS B PHE 456 CZ Distance: 4.416348 - Hydrophobic, 112 - A PRO 101 CG VS B PHE 456 CD2 Distance: 5.367649 - Hydrophobic, 113 - A PRO 101 CG VS B PHE 456 CE1 Distance: 5.358014 - Hydrophobic, 114 - A PRO 101 CG VS B PHE 456 CE2 Distance: 4.073563 - Hydrophobic, 115 - A PRO 101 CG VS B PHE 456 CZ Distance: 4.060220 - Hydrophobic, 116 - A PRO 101 CB VS B TYR 489 CB Distance: 4.349340 - Hydrophobic, 117 - A PRO 101 CB VS B TYR 489 CG Distance: 4.622584 - Hydrophobic, 118 - A PRO 101 CB VS B TYR 489 CD1 Distance: 4.787706 - Hydrophobic, 119 - A PRO 101 CB VS B TYR 489 CD2 Distance: 5.302784 - Hydrophobic, 120 - A PRO 101 CG VS B TYR 489 CB Distance: 4.276167 - Hydrophobic, 121 - A PRO 101 CG VS B TYR 489 CG Distance: 4.048365 - Hydrophobic, 122 - A PRO 101 CG VS B TYR 489 CD1 Distance: 4.022390 - Hydrophobic, 123 - A PRO 101 CG VS B TYR 489 CD2 Distance: 4.558192 - Hydrophobic, 124 - A PRO 101 CG VS B TYR 489 CE1 Distance: 4.513277 - Hydrophobic, 125 - A PRO 101 CG VS B TYR 489 CE2 Distance: 4.995971 - Hydrophobic, 126 - A PRO 101 O VS B PHE 490 N Distance: 4.079831 - Hydrogen Bonds, 127 - A PRO 101 CB VS B GLN 493 CB Distance: 5.467342 - Hydrophobic, 128 - A GLY 102 N VS B PHE 490 O Distance: 4.527534 - Hydrogen Bonds, 129 - A GLY 102 N VS B LEU 492 O Distance: 4.025741 - Hydrogen Bonds, 130 - A GLY 102 N VS B GLN 493 OE1 Distance: 3.276034 - Hydrogen Bonds, 131 - A LEU 103 CD1 VS B GLU 484 CG Distance: 4.580447 - Hydrophobic, 132 - A LEU 103 CB VS B PHE 490 CB Distance: 5.116674 - Hydrophobic, 133 - A LEU 103 CB VS B PHE 490 CG Distance: 5.009762 - Hydrophobic, 134 - A LEU 103 CB VS B PHE 490 CD2 Distance: 5.010414 - Hydrophobic, 135 - A LEU 103 CB VS B PHE 490 CE2 Distance: 5.494422 - Hydrophobic, 136 - A LEU 103 CG VS B PHE 490 CB Distance: 4.044083 - Hydrophobic, 137 - A LEU 103 CG VS B PHE 490 CG Distance: 3.703926 - Hydrophobic, 138 - A LEU 103 CG VS B PHE 490 CD1 Distance: 4.020197 - Hydrophobic, 139 - A LEU 103 CG VS B PHE 490 CD2 Distance: 3.860805 - Hydrophobic, 140 - A LEU 103 CG VS B PHE 490 CE1 Distance: 4.445962 - Hydrophobic, 141 - A LEU 103 CG VS B PHE 490 CE2 Distance: 4.300415 - Hydrophobic, 142 - A LEU 103 CG VS B PHE 490 CZ Distance: 4.578251 - Hydrophobic, 143 - A LEU 103 CD1 VS B PHE 490 CB Distance: 3.924904 - Hydrophobic, 144 - A LEU 103 CD1 VS B PHE 490 CG Distance: 3.828335 - Hydrophobic, 145 - A LEU 103 CD1 VS B PHE 490 CD1 Distance: 3.830681 - Hydrophobic, 146 - A LEU 103 CD1 VS B PHE 490 CD2 Distance: 4.470366 - Hydrophobic, 147 - A LEU 103 CD1 VS B PHE 490 CE1 Distance: 4.468283 - Hydrophobic, 148 - A LEU 103 CD1 VS B PHE 490 CE2 Distance: 5.032332 - Hydrophobic, 149 - A LEU 103 CD1 VS B PHE 490 CZ Distance: 5.034249 - Hydrophobic, 150 - A LEU 103 CD2 VS B PHE 490 CB Distance: 4.904255 - Hydrophobic, 151 - A LEU 103 CD2 VS B PHE 490 CG Distance: 4.105616 - Hydrophobic, 152 - A LEU 103 CD2 VS B PHE 490 CD1 Distance: 4.114873 - Hydrophobic, 153 - A LEU 103 CD2 VS B PHE 490 CD2 Distance: 4.014461 - Hydrophobic, 154 - A LEU 103 CD2 VS B PHE 490 CE1 Distance: 4.042400 - Hydrophobic, 155 - A LEU 103 CD2 VS B PHE 490 CE2 Distance: 3.931638 - Hydrophobic, 156 - A LEU 103 CD2 VS B PHE 490 CZ Distance: 3.947840 - Hydrophobic, 157 - A LEU 103 N VS B LEU 492 O Distance: 4.198404 - Hydrogen Bonds, 158 - A ARG 104 CG VS B TYR 449 CB Distance: 4.804196 - Hydrophobic, 159 - A ARG 104 CG VS B TYR 449 CG Distance: 4.906705 - Hydrophobic, 160 - A ARG 104 CG VS B TYR 449 CD1 Distance: 5.155372 - Hydrophobic, 161 - A ARG 104 CG VS B TYR 449 CD2 Distance: 5.424698 - Hydrophobic, 162 - A ARG 104 NE VS B TYR 449 O Distance: 4.871703 - Hydrogen Bonds, 163 - A ARG 104 NH2 VS B TYR 449 O Distance: 4.403788 - Hydrogen Bonds, 164 - A ARG 104 NH2 VS B ASN 450 OD1 Distance: 4.077658 - Hydrogen Bonds, 165 - A PHE 105 CG VS B TYR 449 CG Distance: 5.583402 - Aromatic Stacking, 166 - A PHE 105 CD2 VS B TYR 449 CE1 Distance: 5.237997 - Hydrophobic, 167 - A PHE 105 CD2 VS B TYR 449 CE2 Distance: 5.435708 - Hydrophobic, 168 - A PHE 105 CE1 VS B TYR 449 CE1 Distance: 5.114839 - Hydrophobic, 169 - A PHE 105 CE2 VS B TYR 449 CG Distance: 5.359540 - Hydrophobic, 170 - A PHE 105 CE2 VS B TYR 449 CD1 Distance: 4.855863 - Hydrophobic, 171 - A PHE 105 CE2 VS B TYR 449 CD2 Distance: 5.147206 - Hydrophobic, 172 - A PHE 105 CE2 VS B TYR 449 CE1 Distance: 4.030718 - Hydrophobic, 173 - A PHE 105 CE2 VS B TYR 449 CE2 Distance: 4.376980 - Hydrophobic, 174 - A PHE 105 CZ VS B TYR 449 CD1 Distance: 4.957581 - Hydrophobic, 175 - A PHE 105 CZ VS B TYR 449 CE1 Distance: 3.947137 - Hydrophobic, 176 - A PHE 105 CZ VS B TYR 449 CE2 Distance: 4.897938 - Hydrophobic, 177 - A ARG 106 NE VS B GLU 484 OE1 Distance: 5.303792 - Attractive, 178 - A ARG 106 NE VS B GLU 484 OE2 Distance: 4.561902 - Attractive, Hydrogen Bonds, 179 - A ARG 106 CZ VS B GLU 484 OE1 Distance: 4.070034 - Attractive, 180 - A ARG 106 CZ VS B GLU 484 OE2 Distance: 3.245216 - Attractive, 181 - A ARG 106 NH1 VS B GLU 484 OE1 Distance: 4.035726 - Attractive, Hydrogen Bonds, 182 - A ARG 106 NH1 VS B GLU 484 OE2 Distance: 2.881857 - Attractive, Hydrogen Bonds, 183 - A ARG 106 NH2 VS B GLU 484 OE1 Distance: 3.248726 - Attractive, Hydrogen Bonds, 184 - A ARG 106 NH2 VS B GLU 484 OE2 Distance: 2.784195 - Attractive, Hydrogen Bonds, 185 - A TYR 109 CE2 VS B PHE 486 CD1 Distance: 5.207489 - Hydrophobic, 186 - A HIS 166 NE2 VS B ASN 450 OD1 Distance: 4.033898 - Hydrogen Bonds, 187 - A TYR 170 CG VS B PHE 490 CD1 Distance: 6.553016 - Aromatic Stacking, 188 - A TYR 170 CE2 VS B PHE 490 CE1 Distance: 4.994597 - Hydrophobic, 189 - A TYR 170 CE2 VS B PHE 490 CZ Distance: 4.968114 - Hydrophobic, 190 - A TYR 189 CE2 VS B GLU 484 CB Distance: 4.782780 - Hydrophobic, 191 - A TYR 189 CE2 VS B GLU 484 CG Distance: 4.863021 - Hydrophobic, 192 - A TYR 189 OH VS B GLU 484 N Distance: 4.285145 - Hydrogen Bonds, 193 - A TYR 189 OH VS B GLU 484 O Distance: 4.033609 - Hydrogen Bonds, 194 - A TYR 189 OH VS B GLU 484 OE1 Distance: 4.238073 - Hydrogen Bonds, 195 - A GLN 233 CB VS B TYR 449 CD2 Distance: 5.005829 - Hydrophobic, 196 - A GLN 233 CB VS B TYR 449 CE2 Distance: 4.508882 - Hydrophobic, 197 - A THR 234 N VS B GLY 446 O Distance: 4.442580 - Hydrogen Bonds, 198 - A THR 234 OG1 VS B GLY 446 O Distance: 2.950972 - Hydrogen Bonds, 199 - A THR 234 N VS B TYR 449 OH Distance: 4.145314 - Hydrogen Bonds, 200 - A THR 234 OG1 VS B TYR 449 OH Distance: 3.794414 - Hydrogen Bonds, 201 - A THR 234 CG2 VS B TYR 449 CE2 Distance: 5.272823 - Hydrophobic,