VIRAL PROTEIN/IMMUNE SYSTEM STRUCTURE OF THE SARS-COV-2 SPIKE GLYCOPROTEIN IN COMPLEX WITH THE C105 NEUTRALIZING ANTIBODY FAB FRAGMENT (STATE 1): 0 - B GLN 409 NE2 VS N TYR 58 OH Distance: 4.531726 - Hydrogen Bonds, 1 - B THR 415 OG1 VS N SER 56 OG Distance: 4.831936 - Hydrogen Bonds, 2 - B LYS 417 CB VS N TYR 52 CD2 Distance: 4.995693 - Hydrophobic, 3 - B LYS 417 CB VS N TYR 52 CE2 Distance: 4.509124 - Hydrophobic, 4 - B LYS 417 CG VS N TYR 52 CD2 Distance: 4.263250 - Hydrophobic, 5 - B LYS 417 CG VS N TYR 52 CE2 Distance: 3.439251 - Hydrophobic, 6 - B LYS 417 CD VS N TYR 52 CD2 Distance: 5.285051 - Hydrophobic, 7 - B LYS 417 CD VS N TYR 52 CE2 Distance: 4.226860 - Hydrophobic, 8 - B LYS 417 NZ VS N GLU 96 OE1 Distance: 6.001844 - Attractive, 9 - B LYS 417 NZ VS N GLU 96 OE2 Distance: 6.152732 - Attractive, 10 - B LYS 417 CG VS N TRP 98 CZ2 Distance: 5.286049 - Hydrophobic, 11 - B LYS 417 CD VS N TRP 98 CZ2 Distance: 3.778929 - Hydrophobic, 12 - B LYS 417 CD VS N TRP 98 CH2 Distance: 4.928046 - Hydrophobic, 13 - B ASP 420 OD2 VS N SER 56 OG Distance: 4.080214 - Hydrogen Bonds, 14 - B TYR 421 CE2 VS N TYR 33 CE1 Distance: 5.031054 - Hydrophobic, 15 - B TYR 421 OH VS N SER 53 N Distance: 4.338107 - Hydrogen Bonds, 16 - B TYR 421 OH VS N SER 53 O Distance: 4.797920 - Hydrogen Bonds, 17 - B TYR 421 OH VS N SER 53 OG Distance: 2.182727 - Hydrogen Bonds, 18 - B TYR 421 OH VS N GLY 54 N Distance: 3.187581 - Hydrogen Bonds, 19 - B TYR 453 CD2 VS N TRP 98 CH2 Distance: 5.436500 - Hydrophobic, 20 - B TYR 453 CE1 VS N TRP 98 CZ3 Distance: 5.330724 - Hydrophobic, 21 - B TYR 453 CE1 VS N TRP 98 CH2 Distance: 4.833909 - Hydrophobic, 22 - B TYR 453 CE2 VS N TRP 98 CZ2 Distance: 4.971809 - Hydrophobic, 23 - B TYR 453 CE2 VS N TRP 98 CZ3 Distance: 5.305259 - Hydrophobic, 24 - B TYR 453 CE2 VS N TRP 98 CH2 Distance: 4.425143 - Hydrophobic, 25 - B TYR 453 OH VS N GLU 99 OE2 Distance: 4.298907 - Hydrogen Bonds, 26 - B LEU 455 O VS N TYR 33 OH Distance: 2.186861 - Hydrogen Bonds, 27 - B LEU 455 CG VS N TYR 33 CE2 Distance: 5.116332 - Hydrophobic, 28 - B LEU 455 CD1 VS N TYR 33 CE2 Distance: 5.349071 - Hydrophobic, 29 - B LEU 455 CD1 VS N TRP 98 CZ2 Distance: 4.566812 - Hydrophobic, 30 - B LEU 455 CD1 VS N TRP 98 CH2 Distance: 4.938523 - Hydrophobic, 31 - B LEU 455 CD2 VS N TRP 98 CZ2 Distance: 5.195430 - Hydrophobic, 32 - B LEU 455 CD2 VS N TRP 98 CH2 Distance: 5.089518 - Hydrophobic, 33 - B LEU 455 CG VS N GLU 99 CB Distance: 5.354014 - Hydrophobic, 34 - B LEU 455 CG VS N GLU 99 CG Distance: 5.238695 - Hydrophobic, 35 - B LEU 455 CD1 VS N GLU 99 CG Distance: 5.495806 - Hydrophobic, 36 - B LEU 455 CD2 VS N GLU 99 CB Distance: 4.271803 - Hydrophobic, 37 - B LEU 455 CD2 VS N GLU 99 CG Distance: 3.953178 - Hydrophobic, 38 - B PHE 456 N VS N TYR 33 OH Distance: 4.227801 - Hydrogen Bonds, 39 - B PHE 456 CG VS N TYR 33 CG Distance: 6.525104 - Aromatic Stacking, 40 - B PHE 456 CD1 VS N TYR 33 CE1 Distance: 5.402629 - Hydrophobic, 41 - B PHE 456 CD1 VS N TYR 33 CE2 Distance: 5.027497 - Hydrophobic, 42 - B PHE 456 CE1 VS N TYR 33 CE2 Distance: 4.676858 - Hydrophobic, 43 - B PHE 456 CD1 VS N LEU 100 CD1 Distance: 4.629288 - Hydrophobic, 44 - B PHE 456 CE1 VS N LEU 100 CG Distance: 4.349418 - Hydrophobic, 45 - B PHE 456 CE1 VS N LEU 100 CD1 Distance: 3.436154 - Hydrophobic, 46 - B PHE 456 CE1 VS N LEU 100 CD2 Distance: 4.180477 - Hydrophobic, 47 - B PHE 456 CE2 VS N LEU 100 CG Distance: 5.395423 - Hydrophobic, 48 - B PHE 456 CE2 VS N LEU 100 CD1 Distance: 5.070682 - Hydrophobic, 49 - B PHE 456 CE2 VS N LEU 100 CD2 Distance: 4.574886 - Hydrophobic, 50 - B PHE 456 CZ VS N LEU 100 CG Distance: 4.201937 - Hydrophobic, 51 - B PHE 456 CZ VS N LEU 100 CD1 Distance: 3.730277 - Hydrophobic, 52 - B PHE 456 CZ VS N LEU 100 CD2 Distance: 3.566652 - Hydrophobic, 53 - B ARG 457 N VS N SER 53 OG Distance: 4.512670 - Hydrogen Bonds, 54 - B ARG 457 O VS N SER 53 OG Distance: 2.630677 - Hydrogen Bonds, 55 - B ARG 457 O VS N GLY 54 N Distance: 4.780904 - Hydrogen Bonds, 56 - B LYS 458 NZ VS N THR 28 OG1 Distance: 4.764144 - Hydrogen Bonds, 57 - B LYS 458 NZ VS N SER 30 O Distance: 2.360438 - Hydrogen Bonds, 58 - B LYS 458 NZ VS N SER 30 OG Distance: 3.510272 - Hydrogen Bonds, 59 - B LYS 458 NZ VS N SER 31 OG Distance: 4.442901 - Hydrogen Bonds, 60 - B LYS 458 N VS N SER 53 OG Distance: 4.708713 - Hydrogen Bonds, 61 - B LYS 458 O VS N SER 53 OG Distance: 3.588019 - Hydrogen Bonds, 62 - B LYS 458 O VS N GLY 54 N Distance: 3.195000 - Hydrogen Bonds, 63 - B LYS 458 NZ VS N ARG 71 CZ Distance: 6.833138 - Repulsive, 64 - B LYS 458 NZ VS N ARG 71 NH1 Distance: 6.773451 - Repulsive, 65 - B LYS 458 NZ VS N ARG 71 NH2 Distance: 6.892368 - Repulsive, 66 - B TYR 473 OH VS N SER 30 O Distance: 4.307522 - Hydrogen Bonds, 67 - B TYR 473 OH VS N SER 31 N Distance: 4.444764 - Hydrogen Bonds, 68 - B TYR 473 OH VS N SER 31 O Distance: 2.799605 - Hydrogen Bonds, 69 - B TYR 473 OH VS N SER 31 OG Distance: 2.515740 - Hydrogen Bonds, 70 - B TYR 473 OH VS N ASN 32 N Distance: 4.718589 - Hydrogen Bonds, 71 - B TYR 473 OH VS N SER 53 OG Distance: 4.854176 - Hydrogen Bonds, 72 - B GLN 474 O VS N SER 31 OG Distance: 2.979634 - Hydrogen Bonds, 73 - B ALA 475 O VS N THR 28 N Distance: 4.723024 - Hydrogen Bonds, 74 - B ALA 475 N VS N SER 31 OG Distance: 4.409295 - Hydrogen Bonds, 75 - B ALA 475 O VS N SER 31 OG Distance: 4.157712 - Hydrogen Bonds, 76 - B ALA 475 O VS N ASN 32 ND2 Distance: 2.769406 - Hydrogen Bonds, 77 - B GLY 476 O VS N THR 28 N Distance: 4.639937 - Hydrogen Bonds, 78 - B GLY 476 N VS N SER 31 OG Distance: 4.598049 - Hydrogen Bonds, 79 - B GLY 476 O VS N SER 31 OG Distance: 4.660543 - Hydrogen Bonds, 80 - B PHE 486 CE2 VS N VAL 2 CG2 Distance: 5.429712 - Hydrophobic, 81 - B PHE 486 CZ VS N VAL 2 CG2 Distance: 5.245902 - Hydrophobic, 82 - B ASN 487 ND2 VS N GLY 26 O Distance: 4.153226 - Hydrogen Bonds, 83 - B TYR 489 OH VS N ARG 94 NH2 Distance: 3.666060 - Hydrogen Bonds, 84 - B TYR 489 CD1 VS N LEU 100 CD2 Distance: 5.461454 - Hydrophobic, 85 - B TYR 489 CE1 VS N LEU 100 CD2 Distance: 5.140225 - Hydrophobic, 86 - B GLN 493 NE2 VS N GLU 99 OE1 Distance: 4.309836 - Hydrogen Bonds, 87 - B GLN 493 NE2 VS N GLU 99 OE2 Distance: 4.796650 - Hydrogen Bonds, 88 - B TYR 495 CD1 VS N TRP 98 CH2 Distance: 5.328843 - Hydrophobic, 89 - B TYR 495 CE1 VS N TRP 98 CH2 Distance: 4.948657 - Hydrophobic, 90 - B TYR 505 CG VS N TRP 98 CG Distance: 6.340959 - Aromatic Stacking, 91 - B TYR 505 CD1 VS N TRP 98 CZ3 Distance: 5.347992 - Hydrophobic, 92 - B TYR 505 CE1 VS N TRP 98 CD2 Distance: 5.356135 - Hydrophobic, 93 - B TYR 505 CE1 VS N TRP 98 CE3 Distance: 4.966360 - Hydrophobic, 94 - B TYR 505 CE1 VS N TRP 98 CZ3 Distance: 5.095058 - Hydrophobic,